Rxivist logo

Author: Xavier Didelot

Rankings

  • All-time downloads: 22,034 (rank: 9,982 (tie) )
  • Categories:
    • bioinformatics: 2,433 (rank: 6,744 (tie) )
    • epidemiology: 1,539 (rank: 8,423 )
    • evolutionary biology: 4,610 (rank: 804 )
    • genetics: 954 (rank: 17,791 (tie) )
    • genomics: 2,874 (rank: 9,273 )
    • infectious diseases: 184 (rank: 51,754 (tie) )
    • microbiology: 9,440 (rank: 1,809 (tie) )

Downloads per author, site-wide

Preprints

A Phylogenetic Method To Perform Genome-Wide Association Studies In Microbes That Accounts For Population Structure And Recombination

microbiology more details view paper
  • Downloaded 1,885 times
  • Download rankings, all-time:
    • Site-wide: 10,270
    • In microbiology: 610
  • Year to date:
    • Site-wide: 120,832
  • Since beginning of last month:
    • Site-wide: 144,063

Vaccination against antibiotic resistant gonorrhoea for men who have sex with men in England: a modelling study

microbiology more details view paper
  • Downloaded 1,491 times
  • Download rankings, all-time:
    • Site-wide: 14,566
    • In microbiology: 845
  • Year to date:
    • Site-wide: 133,656
  • Since beginning of last month:
    • Site-wide: 112,124

Bayesian inference of infectious disease transmission from whole genome sequence data

genomics more details view paper
  • Downloaded 1,487 times
  • Download rankings, all-time:
    • Site-wide: 14,626
    • In genomics: 1,458
  • Year to date:
    • Site-wide: 153,314
  • Since beginning of last month:
    • Site-wide: 153,603

The global distribution and spread of the mobilized colistin resistance gene mcr-1

microbiology more details view paper
  • Downloaded 1,339 times
  • Download rankings, all-time:
    • Site-wide: 17,188
    • In microbiology: 1,001
  • Year to date:
    • Site-wide: 128,806
  • Since beginning of last month:
    • Site-wide: 136,435

Identification of hidden population structure in time-scaled phylogenies

evolutionary biology more details view paper
  • Downloaded 1,266 times
  • Download rankings, all-time:
    • Site-wide: 18,659
    • In evolutionary biology: 657
  • Year to date:
    • Site-wide: 75,843
  • Since beginning of last month:
    • Site-wide: 111,475

Why panmictic bacteria are rare

microbiology more details view paper
  • Downloaded 1,189 times
  • Download rankings, all-time:
    • Site-wide: 20,489
    • In microbiology: 1,194
  • Year to date:
    • Site-wide: 69,370
  • Since beginning of last month:
    • Site-wide: 77,718

Genomic infectious disease epidemiology in partially sampled and ongoing outbreaks

epidemiology more details view paper
  • Downloaded 1,137 times
  • Download rankings, all-time:
    • Site-wide: 21,886
    • In epidemiology: 1,346
  • Year to date:
    • Site-wide: 132,731
  • Since beginning of last month:
    • Site-wide: 146,125

Automated reconstruction of all gene histories in large bacterial pangenome datasets and search for co-evolved gene modules with Pantagruel

bioinformatics more details view paper
  • Downloaded 1,061 times
  • Download rankings, all-time:
    • Site-wide: 24,257
    • In bioinformatics: 2,745
  • Year to date:
    • Site-wide: 49,058
  • Since beginning of last month:
    • Site-wide: 112,145

Bayesian inference of ancestral dates on bacterial phylogenetic trees

bioinformatics more details view paper
  • Downloaded 970 times
  • Download rankings, all-time:
    • Site-wide: 27,730
    • In bioinformatics: 3,099
  • Year to date:
    • Site-wide: 132,178
  • Since beginning of last month:
    • Site-wide: 136,443

Emerging phylogenetic structure of the SARS-CoV-2 pandemic

genetics more details view paper
  • Downloaded 954 times
  • Download rankings, all-time:
    • Site-wide: 28,395
    • In genetics: 1,273
  • Year to date:
    • Site-wide: 83,759
  • Since beginning of last month:
    • Site-wide: 64,374

Worldwide population structure, long term demography, and local adaptation of Helicobacter pylori

evolutionary biology more details view paper
  • Downloaded 720 times
  • Download rankings, all-time:
    • Site-wide: 42,154
    • In evolutionary biology: 1,960
  • Year to date:
    • Site-wide: 132,974
  • Since beginning of last month:
    • Site-wide: 148,241

Modeling the growth and decline of pathogen effective population size provides insight into epidemic dynamics and drivers of antimicrobial resistance

evolutionary biology more details view paper
  • Downloaded 644 times
  • Download rankings, all-time:
    • Site-wide: 48,935
    • In evolutionary biology: 2,363
  • Year to date:
    • Site-wide: 119,803
  • Since beginning of last month:
    • Site-wide: 124,659

Bayesian Inference of the Evolution of a Phenotype Distribution on a Phylogenetic Tree

evolutionary biology more details view paper
  • Downloaded 635 times
  • Download rankings, all-time:
    • Site-wide: 49,853
    • In evolutionary biology: 2,420
  • Year to date:
    • Site-wide: 144,441
  • Since beginning of last month:
    • Site-wide: 129,715

The Clostridioides difficile species problem: global phylogenomic analysis uncovers three ancient, toxigenic, genomospecies

microbiology more details view paper
  • Downloaded 632 times
  • Download rankings, all-time:
    • Site-wide: 50,122
    • In microbiology: 3,083
  • Year to date:
    • Site-wide: 24,130
  • Since beginning of last month:
    • Site-wide: 39,641

Phylogenomic analysis reveals the basis of adaptation of Pseudorhizobium species to extreme environments

microbiology more details view paper
  • Downloaded 630 times
  • Download rankings, all-time:
    • Site-wide: 50,354
    • In microbiology: 3,108
  • Year to date:
    • Site-wide: 66,273
  • Since beginning of last month:
    • Site-wide: 83,766

Declaring a tuberculosis outbreak over with genomic epidemiology

genomics more details view paper
  • Downloaded 580 times
  • Download rankings, all-time:
    • Site-wide: 55,982
    • In genomics: 4,164
  • Year to date:
    • Site-wide: 149,435
  • Since beginning of last month:
    • Site-wide: 153,230

Quantifying The Fitness Benefit And Cost Of Cefixime Resistance In Neisseria gonorrhoeae To Inform Prescription Policy

microbiology more details view paper
  • Downloaded 568 times
  • Download rankings, all-time:
    • Site-wide: 57,487
    • In microbiology: 3,597
  • Year to date:
    • Site-wide: 143,165
  • Since beginning of last month:
    • Site-wide: 152,004

The speciation and hybridization history of the genus Salmonella

microbiology more details view paper
  • Downloaded 500 times
  • Download rankings, all-time:
    • Site-wide: 66,571
    • In microbiology: 4,289
  • Year to date:
    • Site-wide: 130,806
  • Since beginning of last month:
    • Site-wide: 93,721

Frequent recombination of pneumococcal capsule highlights future risks of emergence of novel serotypes.

evolutionary biology more details view paper
  • Downloaded 498 times
  • Download rankings, all-time:
    • Site-wide: 66,846
    • In evolutionary biology: 3,385
  • Year to date:
    • Site-wide: 121,215
  • Since beginning of last month:
    • Site-wide: 110,553

Detection of a bedaquiline / clofazimine resistance reservoir in Mycobacterium tuberculosis predating the antibiotic era

genomics more details view paper
  • Downloaded 490 times
  • Download rankings, all-time:
    • Site-wide: 68,130
    • In genomics: 4,770
  • Year to date:
    • Site-wide: 25,137
  • Since beginning of last month:
    • Site-wide: 27,137

Population genomics and antimicrobial resistance in Corynebacterium diphtheriae

microbiology more details view paper
  • Downloaded 437 times
  • Download rankings, all-time:
    • Site-wide: 76,984
    • In microbiology: 5,150
  • Year to date:
    • Site-wide: 95,749
  • Since beginning of last month:
    • Site-wide: 114,738

A role for tetracycline selection in the evolution of Clostridium difficile PCR-ribotype 078

microbiology more details view paper
  • Downloaded 423 times
  • Download rankings, all-time:
    • Site-wide: 79,620
    • In microbiology: 5,324
  • Year to date:
    • Site-wide: 123,417
  • Since beginning of last month:
    • Site-wide: 154,113

Model design for non-parametric phylodynamic inference and applications to pathogen surveillance

bioinformatics more details view paper
  • Downloaded 402 times
  • Download rankings, all-time:
    • Site-wide: 83,714
    • In bioinformatics: 7,550
  • Year to date:
    • Site-wide: 17,005
  • Since beginning of last month:
    • Site-wide: 19,355

A dynamic power-law sexual network model of gonorrhoea outbreaks

epidemiology more details view paper
  • Downloaded 402 times
  • Download rankings, all-time:
    • Site-wide: 83,658
    • In epidemiology: 3,601
  • Year to date:
    • Site-wide: 141,204
  • Since beginning of last month:
    • Site-wide: 156,678

Cross-species evolutionary rewiring in the enteric bacterium Campylobacter

microbiology more details view paper
  • Downloaded 346 times
  • Download rankings, all-time:
    • Site-wide: 95,539
    • In microbiology: 6,639
  • Year to date:
    • Site-wide: 21,208
  • Since beginning of last month:
    • Site-wide: 28,642

Bayesian inference of clonal expansions in a dated phylogeny

evolutionary biology more details view paper
  • Downloaded 330 times
  • Download rankings, all-time:
    • Site-wide: 99,358
    • In evolutionary biology: 5,014
  • Year to date:
    • Site-wide: 22,721
  • Since beginning of last month:
    • Site-wide: None

The sudden emergence of a Neisseria gonorrhoeae strain with reduced susceptibility to extended-spectrum cephalosporins, Norway

genomics more details view paper
  • Downloaded 317 times
  • Download rankings, all-time:
    • Site-wide: 102,421
    • In genomics: 6,162
  • Year to date:
    • Site-wide: 135,078
  • Since beginning of last month:
    • Site-wide: 154,750

Hospital outbreak of carbapenem-resistant Enterobacteriales associated with an OXA-48 plasmid carried mostly by Escherichia coli ST399

evolutionary biology more details view paper
  • Downloaded 296 times
  • Download rankings, all-time:
    • Site-wide: 107,530
    • In evolutionary biology: 5,382
  • Year to date:
    • Site-wide: 93,834
  • Since beginning of last month:
    • Site-wide: 72,871

Speeding up Inference of Homologous Recombination in Bacteria

evolutionary biology more details view paper
  • Downloaded 221 times
  • Download rankings, all-time:
    • Site-wide: 126,908
    • In evolutionary biology: 6,242
  • Year to date:
    • Site-wide: 112,006
  • Since beginning of last month:
    • Site-wide: 74,487

Comparative evaluation of the transmissibility of SARS-CoV-2 variants of concern

infectious diseases more details view paper
  • Downloaded 184 times
  • Download rankings, all-time:
    • Site-wide: 136,190
    • In infectious diseases: 5,581
  • Year to date:
    • Site-wide: 47,972
  • Since beginning of last month:
    • Site-wide: 45,882

PanLingua

News