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Author: Kasper D Hansen

Rankings

  • All-time downloads: 49,447 (rank: 3,809 )
  • Categories:
    • bioinformatics: 16,727 (rank: 420 )
    • evolutionary biology: 519 (rank: 14,970 (tie) )
    • genetics: 2,814 (rank: 6,959 (tie) )
    • genomics: 24,550 (rank: 526 )
    • molecular biology: 569 (rank: 13,285 (tie) )
    • neuroscience: 4,268 (rank: 5,460 )

Downloads per author, site-wide

Preprints

Preprocessing, normalization and integration of the Illumina HumanMethylationEPIC array

bioinformatics more details view paper
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    • Site-wide: 2,074
    • In bioinformatics: 144
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    • Site-wide: 5,269
  • Since beginning of last month:
    • Site-wide: 20,314

recount: A large-scale resource of analysis-ready RNA-seq expression data

genomics more details view paper
  • Downloaded 4,471 times
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    • Site-wide: 2,975
    • In genomics: 295
  • Year to date:
    • Site-wide: 20,338
  • Since beginning of last month:
    • Site-wide: 25,084

Functional normalization of 450k methylation array data improves replication in large cancer studies

bioinformatics more details view paper
  • Downloaded 3,818 times
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    • Site-wide: 3,707
    • In bioinformatics: 335
  • Year to date:
    • Site-wide: 113,422
  • Since beginning of last month:
    • Site-wide: 152,631

Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data

genomics more details view paper
  • Downloaded 3,516 times
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    • Site-wide: 4,147
    • In genomics: 412
  • Year to date:
    • Site-wide: 31,561
  • Since beginning of last month:
    • Site-wide: 43,829

Human splicing diversity across the Sequence Read Archive

genomics more details view paper
  • Downloaded 2,534 times
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    • Site-wide: 6,647
    • In genomics: 687
  • Year to date:
    • Site-wide: 84,640
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    • Site-wide: 144,110

Neuronal brain region-specific DNA methylation and chromatin accessibility are associated with neuropsychiatric disease heritability

neuroscience more details view paper
  • Downloaded 2,444 times
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    • Site-wide: 7,024
    • In neuroscience: 634
  • Year to date:
    • Site-wide: 53,790
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    • Site-wide: 54,727

Analyzing whole genome bisulfite sequencing data from highly divergent genotypes

genomics more details view paper
  • Downloaded 1,919 times
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    • Site-wide: 9,966
    • In genomics: 999
  • Year to date:
    • Site-wide: 60,212
  • Since beginning of last month:
    • Site-wide: 78,164

Precocious neuronal differentiation and disrupted oxygen responses in Kabuki syndrome

neuroscience more details view paper
  • Downloaded 1,824 times
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    • Site-wide: 10,771
    • In neuroscience: 1,097
  • Year to date:
    • Site-wide: 33,024
  • Since beginning of last month:
    • Site-wide: 69,386

Bacterial Infection Remodels the DNA Methylation Landscape of Human Dendritic Cells

genomics more details view paper
  • Downloaded 1,587 times
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    • Site-wide: 13,142
    • In genomics: 1,322
  • Year to date:
    • Site-wide: 117,025
  • Since beginning of last month:
    • Site-wide: 125,303

Removing unwanted variation between samples in Hi-C experiments

genomics more details view paper
  • Downloaded 1,526 times
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    • Site-wide: 13,954
    • In genomics: 1,399
  • Year to date:
    • Site-wide: 20,601
  • Since beginning of last month:
    • Site-wide: 50,683

Common DNA sequence variation influences 3-dimensional conformation of the human genome

genomics more details view paper
  • Downloaded 1,513 times
  • Download rankings, all-time:
    • Site-wide: 14,134
    • In genomics: 1,414
  • Year to date:
    • Site-wide: 141,864
  • Since beginning of last month:
    • Site-wide: 122,033

Co-expression analysis is biased by a mean-correlation relationship

genomics more details view paper
  • Downloaded 1,468 times
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    • Site-wide: 14,889
    • In genomics: 1,480
  • Year to date:
    • Site-wide: 11,311
  • Since beginning of last month:
    • Site-wide: 14,131

Software For The Integration Of Multi-Omics Experiments In Bioconductor

bioinformatics more details view paper
  • Downloaded 1,389 times
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    • Site-wide: 16,187
    • In bioinformatics: 1,847
  • Year to date:
    • Site-wide: 129,565
  • Since beginning of last month:
    • Site-wide: 123,106

Universal prediction of cell cycle position using transfer learning

genomics more details view paper
  • Downloaded 1,359 times
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    • Site-wide: 16,700
    • In genomics: 1,626
  • Year to date:
    • Site-wide: 2,771
  • Since beginning of last month:
    • Site-wide: 6,133

Linear models enable powerful differential activity analysis in massively parallel reporter assays

bioinformatics more details view paper
  • Downloaded 1,338 times
  • Download rankings, all-time:
    • Site-wide: 17,135
    • In bioinformatics: 1,956
  • Year to date:
    • Site-wide: 113,242
  • Since beginning of last month:
    • Site-wide: 139,357

Rail-dbGaP: analyzing dbGaP-protected data in the cloud with Amazon Elastic MapReduce

bioinformatics more details view paper
  • Downloaded 1,143 times
  • Download rankings, all-time:
    • Site-wide: 21,612
    • In bioinformatics: 2,470
  • Year to date:
    • Site-wide: 96,594
  • Since beginning of last month:
    • Site-wide: 152,339

Promoter CpG density predicts downstream gene loss-of-function intolerance

genetics more details view paper
  • Downloaded 1,049 times
  • Download rankings, all-time:
    • Site-wide: 24,537
    • In genetics: 1,100
  • Year to date:
    • Site-wide: 56,646
  • Since beginning of last month:
    • Site-wide: 74,055

recount3: summaries and queries for large-scale RNA-seq expression and splicing

genomics more details view paper
  • Downloaded 1,018 times
  • Download rankings, all-time:
    • Site-wide: 25,687
    • In genomics: 2,348
  • Year to date:
    • Site-wide: 4,149
  • Since beginning of last month:
    • Site-wide: None

A mammalian methylation array for profiling methylation levels at conserved sequences

bioinformatics more details view paper
  • Downloaded 959 times
  • Download rankings, all-time:
    • Site-wide: 27,989
    • In bioinformatics: 3,137
  • Year to date:
    • Site-wide: 4,528
  • Since beginning of last month:
    • Site-wide: 14,955

Correcting For Cell-Type Heterogeneity In Epigenome-Wide Association Studies: Premature Analyses And Conclusions

bioinformatics more details view paper
  • Downloaded 883 times
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    • Site-wide: 31,493
    • In bioinformatics: 3,489
  • Year to date:
    • Site-wide: 107,707
  • Since beginning of last month:
    • Site-wide: 84,162

Whole genome analysis of the methylome and hydroxymethylome in normal and malignant lung and liver

genomics more details view paper
  • Downloaded 837 times
  • Download rankings, all-time:
    • Site-wide: 33,910
    • In genomics: 2,890
  • Year to date:
    • Site-wide: 131,033
  • Since beginning of last month:
    • Site-wide: 113,859

Co-expression patterns define epigenetic regulators associated with neurological dysfunction

genomics more details view paper
  • Downloaded 793 times
  • Download rankings, all-time:
    • Site-wide: 36,700
    • In genomics: 3,053
  • Year to date:
    • Site-wide: 122,408
  • Since beginning of last month:
    • Site-wide: 124,537

A screen of 1,049 schizophrenia and 30 Alzheimer’s-associated variants for regulatory potential

genetics more details view paper
  • Downloaded 782 times
  • Download rankings, all-time:
    • Site-wide: 37,433
    • In genetics: 1,664
  • Year to date:
    • Site-wide: 99,106
  • Since beginning of last month:
    • Site-wide: 93,446

Human methylome variation across Infinium 450K data on the Gene Expression Omnibus

bioinformatics more details view paper
  • Downloaded 740 times
  • Download rankings, all-time:
    • Site-wide: 40,397
    • In bioinformatics: 4,315
  • Year to date:
    • Site-wide: 20,357
  • Since beginning of last month:
    • Site-wide: 8,249

Compartmap enables inference of higher-order chromatin structure in individual cells from scRNA-seq and scATAC-seq

genomics more details view paper
  • Downloaded 732 times
  • Download rankings, all-time:
    • Site-wide: 41,031
    • In genomics: 3,311
  • Year to date:
    • Site-wide: 6,794
  • Since beginning of last month:
    • Site-wide: 16,502

'Gap hunting' to characterize clustered probe signals in Illumina methylation array data

genomics more details view paper
  • Downloaded 685 times
  • Download rankings, all-time:
    • Site-wide: 44,855
    • In genomics: 3,543
  • Year to date:
    • Site-wide: 133,672
  • Since beginning of last month:
    • Site-wide: 156,718

Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space (AnVIL)

bioinformatics more details view paper
  • Downloaded 636 times
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    • Site-wide: 49,471
    • In bioinformatics: 5,058
  • Year to date:
    • Site-wide: 8,357
  • Since beginning of last month:
    • Site-wide: 47,984

Transient Reduction of DNA Methylation at the Onset of Meiosis in Male Mice

molecular biology more details view paper
  • Downloaded 569 times
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    • Site-wide: 56,949
    • In molecular biology: 1,615
  • Year to date:
    • Site-wide: 146,290
  • Since beginning of last month:
    • Site-wide: 156,617

Precocious Chondrocyte Differentiation Disrupts Skeletal Growth in Kabuki Syndrome Mice

genetics more details view paper
  • Downloaded 560 times
  • Download rankings, all-time:
    • Site-wide: 58,028
    • In genetics: 2,516
  • Year to date:
    • Site-wide: 158,148
  • Since beginning of last month:
    • Site-wide: 154,672

Purifying selection acts on germline methylation to modify the CpG mutation rate at promoters

evolutionary biology more details view paper
  • Downloaded 519 times
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    • Site-wide: 63,431
    • In evolutionary biology: 3,220
  • Year to date:
    • Site-wide: 65,235
  • Since beginning of last month:
    • Site-wide: 49,341

Leveraging the Mendelian Disorders of the Epigenetic Machinery to Systematically Map Functional Epigenetic Variation

genetics more details view paper
  • Downloaded 423 times
  • Download rankings, all-time:
    • Site-wide: 79,084
    • In genetics: 3,397
  • Year to date:
    • Site-wide: 33,354
  • Since beginning of last month:
    • Site-wide: 35,221

Human brain region-specific variably methylated regions (VMRs) are enriched for heritability of distinct neuropsychiatric traits

genomics more details view paper
  • Downloaded 394 times
  • Download rankings, all-time:
    • Site-wide: 84,734
    • In genomics: 5,479
  • Year to date:
    • Site-wide: 16,975
  • Since beginning of last month:
    • Site-wide: 27,665

Placenta DNA methylation at ZNF300 is associated with fetal sex and placental morphology

genomics more details view paper
  • Downloaded 198 times
  • Download rankings, all-time:
    • Site-wide: 132,199
    • In genomics: 7,088
  • Year to date:
    • Site-wide: 43,098
  • Since beginning of last month:
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