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Author: Joseph R. Ecker

Rankings

  • All-time downloads: 76,961 (rank: 2,637 )
  • Categories:
    • bioinformatics: 17,543 (rank: 443 )
    • cell biology: 914 (rank: 13,520 (tie) )
    • genomics: 25,965 (rank: 492 )
    • neuroscience: 25,112 (rank: 290 )
    • plant biology: 7,427 (rank: 189 (tie) )

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Preprints

SnapATAC: A Comprehensive Analysis Package for Single Cell ATAC-seq

bioinformatics more details view paper
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    • Site-wide: 1,162
    • In bioinformatics: 53
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    • Site-wide: 27,250
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    • Site-wide: 12,372

Phased Diploid Genome Assembly with Single Molecule Real-Time Sequencing

bioinformatics more details view paper
  • Downloaded 6,956 times
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    • Site-wide: 1,790
    • In bioinformatics: 99
  • Year to date:
    • Site-wide: 128,537
  • Since beginning of last month:
    • Site-wide: 60,998

An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

neuroscience more details view paper
  • Downloaded 6,922 times
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    • Site-wide: 1,801
    • In neuroscience: 82
  • Year to date:
    • Site-wide: 49,279
  • Since beginning of last month:
    • Site-wide: 7,846

Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse

neuroscience more details view paper
  • Downloaded 6,851 times
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    • Site-wide: 1,832
    • In neuroscience: 85
  • Year to date:
    • Site-wide: 5,258
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    • Site-wide: 7,892

A multimodal cell census and atlas of the mammalian primary motor cortex

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  • Downloaded 5,119 times
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    • Site-wide: 2,746
    • In neuroscience: 152
  • Year to date:
    • Site-wide: 97,460
  • Since beginning of last month:
    • Site-wide: 7,858

Systematic mapping of chromatin state landscapes during mouse development

genomics more details view paper
  • Downloaded 4,917 times
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    • Site-wide: 2,902
    • In genomics: 264
  • Year to date:
    • Site-wide: 142,378
  • Since beginning of last month:
    • Site-wide: 37,407

High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell

genomics more details view paper
  • Downloaded 4,810 times
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    • Site-wide: 2,993
    • In genomics: 276
  • Year to date:
    • Site-wide: 85,840
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    • Site-wide: 70,279

DNA Methylation Atlas of the Mouse Brain at Single-Cell Resolution

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  • Downloaded 4,697 times
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    • Site-wide: 3,074
    • In genomics: 284
  • Year to date:
    • Site-wide: 10,296
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    • Site-wide: 75,970

Single nucleus multi-omics links human cortical cell regulatory genome diversity to disease risk variants

genomics more details view paper
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    • Site-wide: 3,385
    • In genomics: 320
  • Year to date:
    • Site-wide: 1,987
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    • Site-wide: 7,148

The complex architecture and epigenomic impact of plant T-DNA insertions

plant biology more details view paper
  • Downloaded 2,750 times
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    • Site-wide: 6,517
    • In plant biology: 45
  • Year to date:
    • Site-wide: 64,871
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    • Site-wide: 82,742

Multi-omic profiling of transcriptome and DNA methylome in single nuclei with molecular partitioning

genomics more details view paper
  • Downloaded 2,025 times
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    • Site-wide: 10,206
    • In genomics: 991
  • Year to date:
    • Site-wide: 22,500
  • Since beginning of last month:
    • Site-wide: 37,709

Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus

genomics more details view paper
  • Downloaded 1,962 times
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    • Site-wide: 10,698
    • In genomics: 1,036
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 121,586

Genomic decoding of neuronal depolarization by stimulus-specific NPAS4 heterodimers

neuroscience more details view paper
  • Downloaded 1,879 times
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    • Site-wide: 11,416
    • In neuroscience: 1,163
  • Year to date:
    • Site-wide: 60,749
  • Since beginning of last month:
    • Site-wide: 70,858

Single-cell multi-omic profiling of chromatin conformation and DNA methylome

genomics more details view paper
  • Downloaded 1,628 times
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    • Site-wide: 14,112
    • In genomics: 1,359
  • Year to date:
    • Site-wide: 91,952
  • Since beginning of last month:
    • Site-wide: 52,161

Epigenomic Diversity of Cortical Projection Neurons in the Mouse Brain

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  • Downloaded 1,556 times
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    • Site-wide: 15,163
    • In neuroscience: 1,654
  • Year to date:
    • Site-wide: 118,000
  • Since beginning of last month:
    • Site-wide: 59,253

Dnmt3a knockout in excitatory neurons impairs postnatal synapse maturation and is partly compensated by repressive histone modification H3K27me3

neuroscience more details view paper
  • Downloaded 1,264 times
  • Download rankings, all-time:
    • Site-wide: 20,781
    • In neuroscience: 2,488
  • Year to date:
    • Site-wide: 61,847
  • Since beginning of last month:
    • Site-wide: 38,215

Auxin-sensitive Aux/IAA proteins mediate drought tolerance in Arabidopsis by regulating glucosinolate levels

plant biology more details view paper
  • Downloaded 1,220 times
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    • Site-wide: 21,946
    • In plant biology: 308
  • Year to date:
    • Site-wide: 67,252
  • Since beginning of last month:
    • Site-wide: 128,133

Integrated Multi-omic Framework of the Plant Response to Jasmonic Acid

plant biology more details view paper
  • Downloaded 1,100 times
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    • Site-wide: 25,706
    • In plant biology: 389
  • Year to date:
    • Site-wide: 66,079
  • Since beginning of last month:
    • Site-wide: 147,415

Global DNA methylation remodeling during direct reprogramming of fibroblasts to neurons

neuroscience more details view paper
  • Downloaded 1,063 times
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    • Site-wide: 27,092
    • In neuroscience: 3,353
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    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 146,374

The Arabidopsis Auxin F-box proteins AFB4 and AFB5 are Required for Response to the Synthetic Auxin Picloram

plant biology more details view paper
  • Downloaded 935 times
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    • Site-wide: 32,741
    • In plant biology: 561
  • Year to date:
    • Site-wide: 120,284
  • Since beginning of last month:
    • Site-wide: 125,330

PHYTOCHROME INTERACTING FACTORs trigger environmentally responsive chromatin dynamics

genomics more details view paper
  • Downloaded 931 times
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    • Site-wide: 32,982
    • In genomics: 2,752
  • Year to date:
    • Site-wide: 69,854
  • Since beginning of last month:
    • Site-wide: 109,151

Single nucleus multi-omics regulatory atlas of the murine pituitary

cell biology more details view paper
  • Downloaded 914 times
  • Download rankings, all-time:
    • Site-wide: 33,845
    • In cell biology: 1,284
  • Year to date:
    • Site-wide: 52,806
  • Since beginning of last month:
    • Site-wide: 90,584

Genome and time-of-day transcriptome of Wolffia australiana link morphological extreme minimization with un-gated plant growth

plant biology more details view paper
  • Downloaded 868 times
  • Download rankings, all-time:
    • Site-wide: 36,468
    • In plant biology: 664
  • Year to date:
    • Site-wide: 99,495
  • Since beginning of last month:
    • Site-wide: 119,563

Robust enhancer-gene regulation identified by single-cell transcriptomes and epigenomes

bioinformatics more details view paper
  • Downloaded 659 times
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    • Site-wide: 53,791
    • In bioinformatics: 5,353
  • Year to date:
    • Site-wide: 13,905
  • Since beginning of last month:
    • Site-wide: 6,325

Common alleles of CMT2 and NRPE1 are major determinants of de novo DNA methylation variation in Arabidopsis thaliana

genomics more details view paper
  • Downloaded 612 times
  • Download rankings, all-time:
    • Site-wide: 59,342
    • In genomics: 4,282
  • Year to date:
    • Site-wide: 64,533
  • Since beginning of last month:
    • Site-wide: 118,110

A new plant-specific syntaxin-6 protein contributes to the intracytoplasmic route for begomoviruses

plant biology more details view paper
  • Downloaded 554 times
  • Download rankings, all-time:
    • Site-wide: 67,227
    • In plant biology: 1,629
  • Year to date:
    • Site-wide: 46,559
  • Since beginning of last month:
    • Site-wide: 78,960

Loss of Dnmt3a dependent methylation in inhibitory neurons impairs neural function through a mechanism that impacts Rett syndrome

neuroscience more details view paper
  • Downloaded 458 times
  • Download rankings, all-time:
    • Site-wide: 83,500
    • In neuroscience: 12,292
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 117,877

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