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Author: Joseph R. Nery

Rankings

  • All-time downloads: 51,294 (rank: 4,970 )
  • Categories:
    • bioinformatics: 2,343 (rank: 9,005 (tie) )
    • cell biology: 984 (rank: 15,269 (tie) )
    • genomics: 18,029 (rank: 966 )
    • neuroscience: 25,012 (rank: 384 )
    • plant biology: 3,943 (rank: 735 (tie) )

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Preprints

Mimicking genuine drought responses using a high throughput plate assay

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Epigenomic complexity of the human brain revealed by single-cell DNA methylomes and 3D genome structures

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An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

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    • In neuroscience: 83
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Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse

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  • Downloaded 7,483 times
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    • In neuroscience: 86
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A multimodal cell census and atlas of the mammalian primary motor cortex

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  • Downloaded 5,515 times
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    • In neuroscience: 158
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Single nucleus multi-omics links human cortical cell regulatory genome diversity to disease risk variants

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DNA Methylation Atlas of the Mouse Brain at Single-Cell Resolution

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  • Downloaded 4,909 times
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    • Site-wide: 3,495
    • In genomics: 310
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The complex architecture and epigenomic impact of plant T-DNA insertions

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  • Downloaded 2,837 times
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    • Site-wide: 7,682
    • In plant biology: 48
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Multi-omic profiling of transcriptome and DNA methylome in single nuclei with molecular partitioning

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  • Downloaded 2,174 times
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    • Site-wide: 11,484
    • In genomics: 1,060
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Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus

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    • In genomics: 1,137
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Single-cell multi-omic profiling of chromatin conformation and DNA methylome

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    • In genomics: 1,431
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Dnmt3a knockout in excitatory neurons impairs postnatal synapse maturation and is partly compensated by repressive histone modification H3K27me3

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  • Downloaded 1,676 times
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    • Site-wide: 17,038
    • In neuroscience: 1,812
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    • Site-wide: 14,731
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    • Site-wide: 110,814

Epigenomic Diversity of Cortical Projection Neurons in the Mouse Brain

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    • In neuroscience: 1,951
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    • Site-wide: 180,218
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Robust single-cell DNA methylome profiling with snmC-seq2

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  • Downloaded 1,583 times
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    • Site-wide: 18,639
    • In genomics: 1,659
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    • Site-wide: 99,625
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Iterative Refinement of Cellular Identity from Single-Cell Data Using Online Learning

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    • In bioinformatics: 2,074
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Integrated Multi-omic Framework of the Plant Response to Jasmonic Acid

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  • Downloaded 1,158 times
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    • Site-wide: 30,615
    • In plant biology: 436
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    • Site-wide: 146,145
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Global DNA methylation remodeling during direct reprogramming of fibroblasts to neurons

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  • Downloaded 1,153 times
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    • Site-wide: 30,842
    • In neuroscience: 3,635
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Single nucleus multi-omics regulatory atlas of the murine pituitary

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  • Downloaded 1,013 times
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    • Site-wide: 37,611
    • In cell biology: 1,402
  • Year to date:
    • Site-wide: 92,628
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    • Site-wide: 97,703

PHYTOCHROME INTERACTING FACTORs trigger environmentally responsive chromatin dynamics

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  • Downloaded 1,004 times
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    • Site-wide: 38,092
    • In genomics: 2,966
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    • Site-wide: 121,223
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    • Site-wide: 84,572

Robust enhancer-gene regulation identified by single-cell transcriptomes and epigenomes

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  • Downloaded 891 times
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    • Site-wide: 45,749
    • In bioinformatics: 4,742
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Loss of Dnmt3a dependent methylation in inhibitory neurons impairs neural function through a mechanism that impacts Rett syndrome

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  • Downloaded 501 times
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    • Site-wide: 99,925
    • In neuroscience: 14,067
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