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Author: Aleksandra M Walczak

  • Most recently observed institution: Ecole normale superieure

Rankings

  • All-time downloads: 21,041 (rank: 2,578 out of 382,568)
  • Categories:
    • bioinformatics: 1,201 (rank: 9,247 (tie) out of 32,764)
    • biophysics: 2,966 (rank: 559 out of 15,774)
    • developmental biology: 1,649 (rank: 1,190 (tie) out of 14,837)
    • epidemiology: 536 (rank: 3,331 (tie) out of 9,545)
    • evolutionary biology: 316 (rank: 14,136 (tie) out of 19,605)
    • immunology: 12,831 (rank: 191 (tie) out of 20,748)
    • microbiology: 418 (rank: 20,001 (tie) out of 43,014)
    • neuroscience: 648 (rank: 24,943 (tie) out of 64,210)
    • systems biology: 476 (rank: 6,135 (tie) out of 11,251)

Downloads per author, site-wide

Preprints

Immune fingerprinting

genetics more details view paper

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Quantifying lymphocyte receptor diversity

immunology more details view paper
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Measuring the sequence-affinity landscape of antibodies with massively parallel titration curves

biophysics more details view paper
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Detecting T-cell receptors involved in immune responses from single repertoire snapshots

immunology more details view paper
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Longitudinal high-throughput TCR repertoire profiling reveals the dynamics of T cell memory formation after mild COVID-19 infection

immunology more details view paper
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Genesis of the αβ T-cell receptor

immunology more details view paper
  • Downloaded 836 times
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    • In immunology: 378 out of 2,570
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IGoR: A Tool For High-Throughput Immune Repertoire Analysis

immunology more details view paper
  • Downloaded 783 times
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Fierce selection and interference in B-cell repertoire response to chronic HIV-1

immunology more details view paper
  • Downloaded 727 times
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Quantitative Immunology for Physicists

immunology more details view paper
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3 minutes to precisely measure morphogen concentration

developmental biology more details view paper
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    • In developmental biology: 564 out of 2,659
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Disorder and the neural representation of complex odors: smelling in the real world

neuroscience more details view paper
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    • In neuroscience: 3,711 out of 15,884
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Predicting the spectrum of TCR repertoire sharing with a data-driven model of recombination

immunology more details view paper
  • Downloaded 632 times
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    • In immunology: 562 out of 2,570
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Quantifying selection in immune receptor repertoires

immunology more details view paper
  • Downloaded 616 times
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    • In immunology: 588 out of 2,570
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Comprehensive analysis of antiviral adaptive immunity formation and reactivation down to single-cell level

immunology more details view paper
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    • In immunology: 639 out of 2,570
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Inferring processes underlying B-cell repertoire diversity.

immunology more details view paper
  • Downloaded 566 times
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    • In immunology: 673 out of 2,570
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Precision of readout at the hunchback gene

developmental biology more details view paper
  • Downloaded 543 times
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    • In developmental biology: 765 out of 2,659
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Multi-lineage evolution in viral populations driven by host immune systems

epidemiology more details view paper
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    • In epidemiology: 380 out of 1,556
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OLGA: fast computation of generation probabilities of B- and T-cell receptor amino acid sequences and motifs

bioinformatics more details view paper
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Fluctuating fitness shapes the clone size distribution of immune repertoires

immunology more details view paper
  • Downloaded 489 times
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    • In immunology: 794 out of 2,570
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Precision in a rush: trade-offs between reproducibility and steepness of the hunchback expression pattern

biophysics more details view paper
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Active degradation of a regulator controls coordination of downstream genes

systems biology more details view paper
  • Downloaded 476 times
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    • In systems biology: 945 out of 2,309
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Constraints and limitations on the transcriptional response downstream of the Bicoid morphogen gradient

developmental biology more details view paper
  • Downloaded 454 times
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    • In developmental biology: 996 out of 2,659
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Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires

immunology more details view paper
  • Downloaded 434 times
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    • In immunology: 923 out of 2,570
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Habitat Fluctuations Drive Species Covariation in the Human Microbiota

microbiology more details view paper
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    • In microbiology: 2,651 out of 7,690
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Population dynamics of immune repertoires

immunology more details view paper
  • Downloaded 418 times
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    • In immunology: 970 out of 2,570
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Population variability in the generation and thymic selection of T-cell repertoires

immunology more details view paper
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How many different clonotypes do immune repertoires contain?

immunology more details view paper
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    • In immunology: 999 out of 2,570
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How a well-adapting immune system remembers

immunology more details view paper
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    • In immunology: 1,025 out of 2,570
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repgenHMM: a dynamic programming tool to infer the rules of immune receptor generation from sequence data

bioinformatics more details view paper
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    • In bioinformatics: 4,914 out of 8,426
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Precise tracking of vaccine-responding T-cell clones reveals convergent and personalized response in identical twins

immunology more details view paper
  • Downloaded 371 times
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    • In immunology: 1,116 out of 2,570
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A qualitative model for the integration of conflicting exogenous and endogenous signals by dendritic cells

immunology more details view paper
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    • In immunology: 1,130 out of 2,570
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Mouse T cell repertoires as statistical ensembles: overall characterization and age dependence

immunology more details view paper
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    • In immunology: 1,167 out of 2,570
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hunchback Promoters Can Readout Morphogenetic Positional Information in Less Than a Minute

biophysics more details view paper
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    • Site-wide: 51,980 out of 89,266

Physical epistatic landscape of antibody binding affinity

biophysics more details view paper
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    • In biophysics: 2,076 out of 3,891
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Diversity of immune strategies explained by adaptation to pathogen statistics

evolutionary biology more details view paper
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Size and structure of the sequence space of repeat proteins

biophysics more details view paper
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Inferring the immune response from repertoire sequencing

immunology more details view paper
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Flexible machine learning prediction of antigen presentation for rare and common HLA-I alleles

bioinformatics more details view paper
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Single molecule microscopy reveals key physical features of repair foci in living cells

biophysics more details view paper
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On generative models of T-cell receptor sequences

immunology more details view paper
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Optimal prediction with resource constraints using the information bottleneck

biophysics more details view paper
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