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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 63,046 bioRxiv papers from 279,617 authors.

Author: Aleksandra M Walczak

  • Most recently observed institution: CNRS - LPTENS

Rankings

  • All-time downloads: 13,926 (rank: 2,352 (tie) out of 279,617)
  • Categories:
    • bioinformatics: 725 (rank: 10,014 (tie) out of 24,467)
    • biophysics: 2,106 (rank: 488 out of 10,946)
    • developmental biology: 1,184 (rank: 1,018 (tie) out of 10,366)
    • epidemiology: 191 (rank: 6,022 (tie) out of 9,536)
    • evolutionary biology: 272 (rank: 10,877 (tie) out of 15,328)
    • immunology: 8,127 (rank: 52 (tie) out of 12,631)
    • microbiology: 377 (rank: 11,187 (tie) out of 28,639)
    • neuroscience: 542 (rank: 17,715 (tie) out of 46,186)
    • systems biology: 402 (rank: 4,592 (tie) out of 8,489)

Downloads per author, site-wide

Preprints

Measuring the sequence-affinity landscape of antibodies with massively parallel titration curves

biophysics more details view paper
  • Downloaded 1,015 times
  • Download rankings, all-time:
    • Site-wide: 6,943 out of 63,046
    • In biophysics: 200 out of 2,673
  • Year to date:
    • Site-wide: 37,481 out of 63,046
  • Since beginning of last month:
    • Site-wide: 47,665 out of 63,046

Quantifying lymphocyte receptor diversity

immunology more details view paper
  • Downloaded 953 times
  • Download rankings, all-time:
    • Site-wide: 7,659 out of 63,046
    • In immunology: 115 out of 1,568
  • Year to date:
    • Site-wide: 13,983 out of 63,046
  • Since beginning of last month:
    • Site-wide: 12,309 out of 63,046

Detecting T-cell receptors involved in immune responses from single repertoire snapshots

immunology more details view paper
  • Downloaded 878 times
  • Download rankings, all-time:
    • Site-wide: 8,744 out of 63,046
    • In immunology: 138 out of 1,568
  • Year to date:
    • Site-wide: 9,828 out of 63,046
  • Since beginning of last month:
    • Site-wide: 26,034 out of 63,046

IGoR: A Tool For High-Throughput Immune Repertoire Analysis

immunology more details view paper
  • Downloaded 700 times
  • Download rankings, all-time:
    • Site-wide: 12,236 out of 63,046
    • In immunology: 200 out of 1,568
  • Year to date:
    • Site-wide: 35,553 out of 63,046
  • Since beginning of last month:
    • Site-wide: 47,537 out of 63,046

Fierce selection and interference in B-cell repertoire response to chronic HIV-1

immunology more details view paper
  • Downloaded 622 times
  • Download rankings, all-time:
    • Site-wide: 14,425 out of 63,046
    • In immunology: 251 out of 1,568
  • Year to date:
    • Site-wide: 18,685 out of 63,046
  • Since beginning of last month:
    • Site-wide: 31,889 out of 63,046

Quantifying selection in immune receptor repertoires

immunology more details view paper
  • Downloaded 572 times
  • Download rankings, all-time:
    • Site-wide: 16,161 out of 63,046
    • In immunology: 281 out of 1,568
  • Year to date:
    • Site-wide: 57,507 out of 63,046
  • Since beginning of last month:
    • Site-wide: 61,214 out of 63,046

3 minutes to precisely measure morphogen concentration

developmental biology more details view paper
  • Downloaded 558 times
  • Download rankings, all-time:
    • Site-wide: 16,718 out of 63,046
    • In developmental biology: 403 out of 1,876
  • Year to date:
    • Site-wide: 43,285 out of 63,046
  • Since beginning of last month:
    • Site-wide: 42,385 out of 63,046

Disorder and the neural representation of complex odors: smelling in the real world

neuroscience more details view paper
  • Downloaded 542 times
  • Download rankings, all-time:
    • Site-wide: 17,409 out of 63,046
    • In neuroscience: 2,884 out of 11,260
  • Year to date:
    • Site-wide: 34,532 out of 63,046
  • Since beginning of last month:
    • Site-wide: 24,783 out of 63,046

Inferring processes underlying B-cell repertoire diversity.

immunology more details view paper
  • Downloaded 503 times
  • Download rankings, all-time:
    • Site-wide: 19,114 out of 63,046
    • In immunology: 330 out of 1,568
  • Year to date:
    • Site-wide: 46,968 out of 63,046
  • Since beginning of last month:
    • Site-wide: 57,238 out of 63,046

Genesis of the αβ T-cell receptor

immunology more details view paper
  • Downloaded 493 times
  • Download rankings, all-time:
    • Site-wide: 19,623 out of 63,046
    • In immunology: 340 out of 1,568
  • Year to date:
    • Site-wide: 11,538 out of 63,046
  • Since beginning of last month:
    • Site-wide: 11,270 out of 63,046

Precision of readout at the hunchback gene

developmental biology more details view paper
  • Downloaded 485 times
  • Download rankings, all-time:
    • Site-wide: 19,990 out of 63,046
    • In developmental biology: 506 out of 1,876
  • Year to date:
    • Site-wide: 60,214 out of 63,046
  • Since beginning of last month:
    • Site-wide: 58,424 out of 63,046

Predicting the spectrum of TCR repertoire sharing with a data-driven model of recombination

immunology more details view paper
  • Downloaded 460 times
  • Download rankings, all-time:
    • Site-wide: 21,289 out of 63,046
    • In immunology: 377 out of 1,568
  • Year to date:
    • Site-wide: 23,186 out of 63,046
  • Since beginning of last month:
    • Site-wide: 28,620 out of 63,046

Fluctuating fitness shapes the clone size distribution of immune repertoires

immunology more details view paper
  • Downloaded 445 times
  • Download rankings, all-time:
    • Site-wide: 22,144 out of 63,046
    • In immunology: 392 out of 1,568
  • Year to date:
    • Site-wide: 60,348 out of 63,046
  • Since beginning of last month:
    • Site-wide: 60,430 out of 63,046

Active degradation of a regulator controls coordination of downstream genes

systems biology more details view paper
  • Downloaded 402 times
  • Download rankings, all-time:
    • Site-wide: 24,741 out of 63,046
    • In systems biology: 760 out of 1,786
  • Year to date:
    • Site-wide: 39,426 out of 63,046
  • Since beginning of last month:
    • Site-wide: 43,515 out of 63,046

Precision in a rush: trade-offs between reproducibility and steepness of the hunchback expression pattern

biophysics more details view paper
  • Downloaded 401 times
  • Download rankings, all-time:
    • Site-wide: 24,843 out of 63,046
    • In biophysics: 928 out of 2,673
  • Year to date:
    • Site-wide: 37,133 out of 63,046
  • Since beginning of last month:
    • Site-wide: 46,772 out of 63,046

OLGA: fast computation of generation probabilities of B- and T-cell receptor amino acid sequences and motifs

bioinformatics more details view paper
  • Downloaded 381 times
  • Download rankings, all-time:
    • Site-wide: 26,240 out of 63,046
    • In bioinformatics: 3,575 out of 6,269
  • Year to date:
    • Site-wide: 27,057 out of 63,046
  • Since beginning of last month:
    • Site-wide: 43,217 out of 63,046

Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires

immunology more details view paper
  • Downloaded 380 times
  • Download rankings, all-time:
    • Site-wide: 26,276 out of 63,046
    • In immunology: 484 out of 1,568
  • Year to date:
    • Site-wide: 57,400 out of 63,046
  • Since beginning of last month:
    • Site-wide: 58,040 out of 63,046

Habitat Fluctuations Drive Species Covariation in the Human Microbiota

microbiology more details view paper
  • Downloaded 377 times
  • Download rankings, all-time:
    • Site-wide: 26,460 out of 63,046
    • In microbiology: 1,538 out of 5,043
  • Year to date:
    • Site-wide: 57,999 out of 63,046
  • Since beginning of last month:
    • Site-wide: 50,233 out of 63,046

Quantitative Immunology for Physicists

immunology more details view paper
  • Downloaded 366 times
  • Download rankings, all-time:
    • Site-wide: 27,284 out of 63,046
    • In immunology: 514 out of 1,568
  • Year to date:
    • Site-wide: 8,272 out of 63,046
  • Since beginning of last month:
    • Site-wide: 7,910 out of 63,046

Population dynamics of immune repertoires

immunology more details view paper
  • Downloaded 364 times
  • Download rankings, all-time:
    • Site-wide: 27,425 out of 63,046
    • In immunology: 521 out of 1,568
  • Year to date:
    • Site-wide: 47,298 out of 63,046
  • Since beginning of last month:
    • Site-wide: 43,111 out of 63,046

repgenHMM: a dynamic programming tool to infer the rules of immune receptor generation from sequence data

bioinformatics more details view paper
  • Downloaded 344 times
  • Download rankings, all-time:
    • Site-wide: 29,044 out of 63,046
    • In bioinformatics: 3,840 out of 6,269
  • Year to date:
    • Site-wide: 54,877 out of 63,046
  • Since beginning of last month:
    • Site-wide: 59,562 out of 63,046

Mouse T cell repertoires as statistical ensembles: overall characterization and age dependence

immunology more details view paper
  • Downloaded 309 times
  • Download rankings, all-time:
    • Site-wide: 32,187 out of 63,046
    • In immunology: 620 out of 1,568
  • Year to date:
    • Site-wide: 57,952 out of 63,046
  • Since beginning of last month:
    • Site-wide: 55,446 out of 63,046

A qualitative model for the integration of conflicting exogenous and endogenous signals by dendritic cells

immunology more details view paper
  • Downloaded 309 times
  • Download rankings, all-time:
    • Site-wide: 32,176 out of 63,046
    • In immunology: 622 out of 1,568
  • Year to date:
    • Site-wide: 54,381 out of 63,046
  • Since beginning of last month:
    • Site-wide: 47,604 out of 63,046

How a well-adapting immune system remembers

immunology more details view paper
  • Downloaded 307 times
  • Download rankings, all-time:
    • Site-wide: 32,344 out of 63,046
    • In immunology: 624 out of 1,568
  • Year to date:
    • Site-wide: 41,344 out of 63,046
  • Since beginning of last month:
    • Site-wide: 38,722 out of 63,046

Precise tracking of vaccine-responding T-cell clones reveals convergent and personalized response in identical twins

immunology more details view paper
  • Downloaded 290 times
  • Download rankings, all-time:
    • Site-wide: 33,975 out of 63,046
    • In immunology: 666 out of 1,568
  • Year to date:
    • Site-wide: 44,205 out of 63,046
  • Since beginning of last month:
    • Site-wide: 36,535 out of 63,046

Diversity of immune strategies explained by adaptation to pathogen statistics

evolutionary biology more details view paper
  • Downloaded 272 times
  • Download rankings, all-time:
    • Site-wide: 35,798 out of 63,046
    • In evolutionary biology: 2,686 out of 4,239
  • Year to date:
    • Site-wide: 57,620 out of 63,046
  • Since beginning of last month:
    • Site-wide: 49,760 out of 63,046

Size and structure of the sequence space of repeat proteins

biophysics more details view paper
  • Downloaded 240 times
  • Download rankings, all-time:
    • Site-wide: 39,250 out of 63,046
    • In biophysics: 1,624 out of 2,673
  • Year to date:
    • Site-wide: 15,806 out of 63,046
  • Since beginning of last month:
    • Site-wide: 28,610 out of 63,046

Physical epistatic landscape of antibody binding affinity

biophysics more details view paper
  • Downloaded 238 times
  • Download rankings, all-time:
    • Site-wide: 39,487 out of 63,046
    • In biophysics: 1,641 out of 2,673
  • Year to date:
    • Site-wide: 42,008 out of 63,046
  • Since beginning of last month:
    • Site-wide: 41,706 out of 63,046

hunchback promoters can readout morphogenetic positional information in less than a minute

biophysics more details view paper
  • Downloaded 212 times
  • Download rankings, all-time:
    • Site-wide: 42,680 out of 63,046
    • In biophysics: 1,797 out of 2,673
  • Year to date:
    • Site-wide: 18,671 out of 63,046
  • Since beginning of last month:
    • Site-wide: 19,523 out of 63,046

Multi-lineage evolution in viral populations driven by host immune systems

epidemiology more details view paper
  • Downloaded 191 times
  • Download rankings, all-time:
    • Site-wide: 45,287 out of 63,046
    • In epidemiology: 876 out of 1,556
  • Year to date:
    • Site-wide: 21,346 out of 63,046
  • Since beginning of last month:
    • Site-wide: 9,205 out of 63,046

How many different clonotypes do immune repertoires contain?

immunology more details view paper
  • Downloaded 176 times
  • Download rankings, all-time:
    • Site-wide: 47,229 out of 63,046
    • In immunology: 1,033 out of 1,568
  • Year to date:
    • Site-wide: 23,397 out of 63,046
  • Since beginning of last month:
    • Site-wide: 28,985 out of 63,046

Constraints and limitations on decoding positional information: the Bicoid case-study

developmental biology more details view paper
  • Downloaded 141 times
  • Download rankings, all-time:
    • Site-wide: 52,107 out of 63,046
    • In developmental biology: 1,600 out of 1,876
  • Year to date:
    • Site-wide: 30,062 out of 63,046
  • Since beginning of last month:
    • Site-wide: 11,635 out of 63,046

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