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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 57,506 bioRxiv papers from 264,779 authors.

Author: Aleksandra M Walczak

  • Most recently observed institution: CNRS - LPTENS

Rankings

  • All-time downloads: 12,758 (rank: 2,380 (tie) out of 264,779)
  • Categories:
    • bioinformatics: 701 (rank: 9,754 (tie) out of 23,124)
    • biophysics: 2,005 (rank: 479 out of 9,875)
    • developmental biology: 1,021 (rank: 1,148 (tie) out of 9,402)
    • epidemiology: 120 (rank: 7,188 (tie) out of 9,584)
    • evolutionary biology: 262 (rank: 10,417 (tie) out of 14,389)
    • immunology: 7,383 (rank: 55 out of 11,212)
    • microbiology: 366 (rank: 10,211 (tie) out of 26,216)
    • neuroscience: 518 (rank: 16,452 (tie) out of 41,350)
    • systems biology: 382 (rank: 4,231 (tie) out of 7,794)

Downloads per author, site-wide

Preprints

Constraints and limitations on decoding positional information: the Bicoid case-study

developmental biology more details view paper

No bioRxiv download data for this paper yet.

Measuring the sequence-affinity landscape of antibodies with massively parallel titration curves

biophysics more details view paper
  • Downloaded 1,003 times
  • Download rankings, all-time:
    • Site-wide: 6,431 out of 57,506
    • In biophysics: 173 out of 2,431
  • Year to date:
    • Site-wide: 32,509 out of 57,506
  • Since beginning of last month:
    • Site-wide: 31,621 out of 57,506

Quantifying lymphocyte receptor diversity

immunology more details view paper
  • Downloaded 895 times
  • Download rankings, all-time:
    • Site-wide: 7,707 out of 57,506
    • In immunology: 111 out of 1,372
  • Year to date:
    • Site-wide: 14,563 out of 57,506
  • Since beginning of last month:
    • Site-wide: 22,013 out of 57,506

Detecting T-cell receptors involved in immune responses from single repertoire snapshots

immunology more details view paper
  • Downloaded 843 times
  • Download rankings, all-time:
    • Site-wide: 8,465 out of 57,506
    • In immunology: 123 out of 1,372
  • Year to date:
    • Site-wide: 8,447 out of 57,506
  • Since beginning of last month:
    • Site-wide: 14,247 out of 57,506

IGoR: A Tool For High-Throughput Immune Repertoire Analysis

immunology more details view paper
  • Downloaded 681 times
  • Download rankings, all-time:
    • Site-wide: 11,576 out of 57,506
    • In immunology: 173 out of 1,372
  • Year to date:
    • Site-wide: 32,294 out of 57,506
  • Since beginning of last month:
    • Site-wide: 31,764 out of 57,506

Fierce selection and interference in B-cell repertoire response to chronic HIV-1

immunology more details view paper
  • Downloaded 596 times
  • Download rankings, all-time:
    • Site-wide: 13,877 out of 57,506
    • In immunology: 220 out of 1,372
  • Year to date:
    • Site-wide: 16,443 out of 57,506
  • Since beginning of last month:
    • Site-wide: 23,881 out of 57,506

Quantifying selection in immune receptor repertoires

immunology more details view paper
  • Downloaded 567 times
  • Download rankings, all-time:
    • Site-wide: 14,899 out of 57,506
    • In immunology: 241 out of 1,372
  • Year to date:
    • Site-wide: 50,899 out of 57,506
  • Since beginning of last month:
    • Site-wide: 52,101 out of 57,506

3 minutes to precisely measure morphogen concentration

developmental biology more details view paper
  • Downloaded 541 times
  • Download rankings, all-time:
    • Site-wide: 15,847 out of 57,506
    • In developmental biology: 382 out of 1,702
  • Year to date:
    • Site-wide: 39,915 out of 57,506
  • Since beginning of last month:
    • Site-wide: 37,419 out of 57,506

Disorder and the neural representation of complex odors: smelling in the real world

neuroscience more details view paper
  • Downloaded 518 times
  • Download rankings, all-time:
    • Site-wide: 16,736 out of 57,506
    • In neuroscience: 2,723 out of 10,103
  • Year to date:
    • Site-wide: 32,686 out of 57,506
  • Since beginning of last month:
    • Site-wide: 22,538 out of 57,506

Inferring processes underlying B-cell repertoire diversity.

immunology more details view paper
  • Downloaded 495 times
  • Download rankings, all-time:
    • Site-wide: 17,702 out of 57,506
    • In immunology: 296 out of 1,372
  • Year to date:
    • Site-wide: 40,829 out of 57,506
  • Since beginning of last month:
    • Site-wide: 49,367 out of 57,506

Precision of readout at the hunchback gene

developmental biology more details view paper
  • Downloaded 480 times
  • Download rankings, all-time:
    • Site-wide: 18,363 out of 57,506
    • In developmental biology: 465 out of 1,702
  • Year to date:
    • Site-wide: 54,584 out of 57,506
  • Since beginning of last month:
    • Site-wide: 47,625 out of 57,506

Predicting the spectrum of TCR repertoire sharing with a data-driven model of recombination

immunology more details view paper
  • Downloaded 440 times
  • Download rankings, all-time:
    • Site-wide: 20,322 out of 57,506
    • In immunology: 344 out of 1,372
  • Year to date:
    • Site-wide: 20,144 out of 57,506
  • Since beginning of last month:
    • Site-wide: 16,700 out of 57,506

Fluctuating fitness shapes the clone size distribution of immune repertoires

immunology more details view paper
  • Downloaded 440 times
  • Download rankings, all-time:
    • Site-wide: 20,305 out of 57,506
    • In immunology: 345 out of 1,372
  • Year to date:
    • Site-wide: 54,554 out of 57,506
  • Since beginning of last month:
    • Site-wide: 53,623 out of 57,506

Genesis of the αβ T-cell receptor

immunology more details view paper
  • Downloaded 433 times
  • Download rankings, all-time:
    • Site-wide: 20,658 out of 57,506
    • In immunology: 359 out of 1,372
  • Year to date:
    • Site-wide: 11,712 out of 57,506
  • Since beginning of last month:
    • Site-wide: 13,293 out of 57,506

Precision in a rush: trade-offs between reproducibility and steepness of the hunchback expression pattern

biophysics more details view paper
  • Downloaded 391 times
  • Download rankings, all-time:
    • Site-wide: 23,109 out of 57,506
    • In biophysics: 852 out of 2,431
  • Year to date:
    • Site-wide: 31,381 out of 57,506
  • Since beginning of last month:
    • Site-wide: 18,830 out of 57,506

Active degradation of a regulator controls coordination of downstream genes

systems biology more details view paper
  • Downloaded 382 times
  • Download rankings, all-time:
    • Site-wide: 23,682 out of 57,506
    • In systems biology: 718 out of 1,638
  • Year to date:
    • Site-wide: 36,886 out of 57,506
  • Since beginning of last month:
    • Site-wide: 36,720 out of 57,506

Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires

immunology more details view paper
  • Downloaded 370 times
  • Download rankings, all-time:
    • Site-wide: 24,469 out of 57,506
    • In immunology: 433 out of 1,372
  • Year to date:
    • Site-wide: 52,473 out of 57,506
  • Since beginning of last month:
    • Site-wide: 44,183 out of 57,506

Habitat Fluctuations Drive Species Covariation in the Human Microbiota

microbiology more details view paper
  • Downloaded 366 times
  • Download rankings, all-time:
    • Site-wide: 24,731 out of 57,506
    • In microbiology: 1,390 out of 4,580
  • Year to date:
    • Site-wide: 53,747 out of 57,506
  • Since beginning of last month:
    • Site-wide: 52,321 out of 57,506

OLGA: fast computation of generation probabilities of B- and T-cell receptor amino acid sequences and motifs

bioinformatics more details view paper
  • Downloaded 365 times
  • Download rankings, all-time:
    • Site-wide: 24,810 out of 57,506
    • In bioinformatics: 3,445 out of 5,863
  • Year to date:
    • Site-wide: 23,026 out of 57,506
  • Since beginning of last month:
    • Site-wide: 20,262 out of 57,506

Population dynamics of immune repertoires

immunology more details view paper
  • Downloaded 351 times
  • Download rankings, all-time:
    • Site-wide: 25,756 out of 57,506
    • In immunology: 465 out of 1,372
  • Year to date:
    • Site-wide: 43,102 out of 57,506
  • Since beginning of last month:
    • Site-wide: 43,320 out of 57,506

repgenHMM: a dynamic programming tool to infer the rules of immune receptor generation from sequence data

bioinformatics more details view paper
  • Downloaded 336 times
  • Download rankings, all-time:
    • Site-wide: 26,844 out of 57,506
    • In bioinformatics: 3,638 out of 5,863
  • Year to date:
    • Site-wide: 49,149 out of 57,506
  • Since beginning of last month:
    • Site-wide: 40,723 out of 57,506

How a well-adapting immune system remembers

immunology more details view paper
  • Downloaded 293 times
  • Download rankings, all-time:
    • Site-wide: 30,407 out of 57,506
    • In immunology: 574 out of 1,372
  • Year to date:
    • Site-wide: 36,984 out of 57,506
  • Since beginning of last month:
    • Site-wide: 36,526 out of 57,506

Method for identification of condition-associated public antigen receptor sequences

immunology more details view paper
  • Downloaded 289 times
  • Download rankings, all-time:
    • Site-wide: 30,737 out of 57,506
    • In immunology: 579 out of 1,372
  • Year to date:
    • Site-wide: 45,913 out of 57,506
  • Since beginning of last month:
    • Site-wide: 44,697 out of 57,506

Precise tracking of vaccine-responding T-cell clones reveals convergent and personalized response in identical twins

immunology more details view paper
  • Downloaded 276 times
  • Download rankings, all-time:
    • Site-wide: 31,980 out of 57,506
    • In immunology: 605 out of 1,372
  • Year to date:
    • Site-wide: 39,857 out of 57,506
  • Since beginning of last month:
    • Site-wide: 45,256 out of 57,506

Quantitative Immunology for Physicists

immunology more details view paper
  • Downloaded 268 times
  • Download rankings, all-time:
    • Site-wide: 32,738 out of 57,506
    • In immunology: 625 out of 1,372
  • Year to date:
    • Site-wide: 9,815 out of 57,506
  • Since beginning of last month:
    • Site-wide: 688 out of 57,506

Diversity of immune strategies explained by adaptation to pathogen statistics

evolutionary biology more details view paper
  • Downloaded 262 times
  • Download rankings, all-time:
    • Site-wide: 33,369 out of 57,506
    • In evolutionary biology: 2,557 out of 3,940
  • Year to date:
    • Site-wide: 53,019 out of 57,506
  • Since beginning of last month:
    • Site-wide: 49,459 out of 57,506

Physical epistatic landscape of antibody binding affinity

biophysics more details view paper
  • Downloaded 226 times
  • Download rankings, all-time:
    • Site-wide: 37,011 out of 57,506
    • In biophysics: 1,506 out of 2,431
  • Year to date:
    • Site-wide: 37,380 out of 57,506
  • Since beginning of last month:
    • Site-wide: 35,818 out of 57,506

Size and structure of the sequence space of repeat proteins

biophysics more details view paper
  • Downloaded 211 times
  • Download rankings, all-time:
    • Site-wide: 38,728 out of 57,506
    • In biophysics: 1,592 out of 2,431
  • Year to date:
    • Site-wide: 13,920 out of 57,506
  • Since beginning of last month:
    • Site-wide: 20,849 out of 57,506

hunchback promoters can readout morphogenetic positional information in less than a minute

biophysics more details view paper
  • Downloaded 174 times
  • Download rankings, all-time:
    • Site-wide: 43,116 out of 57,506
    • In biophysics: 1,807 out of 2,431
  • Year to date:
    • Site-wide: 17,945 out of 57,506
  • Since beginning of last month:
    • Site-wide: 8,704 out of 57,506

How many different clonotypes do immune repertoires contain?

immunology more details view paper
  • Downloaded 146 times
  • Download rankings, all-time:
    • Site-wide: 46,665 out of 57,506
    • In immunology: 1,011 out of 1,372
  • Year to date:
    • Site-wide: 21,935 out of 57,506
  • Since beginning of last month:
    • Site-wide: 1,962 out of 57,506

Multi-lineage evolution in viral populations driven by host immune systems

epidemiology more details view paper
  • Downloaded 120 times
  • Download rankings, all-time:
    • Site-wide: 49,896 out of 57,506
    • In epidemiology: 1,120 out of 1,556
  • Year to date:
    • Site-wide: 27,116 out of 57,506
  • Since beginning of last month:
    • Site-wide: 5,797 out of 57,506

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