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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 57,915 bioRxiv papers from 266,490 authors.

Author: Thierry Mora

  • Most recently observed institution: Ecole normale superieure

Rankings

  • All-time downloads: 13,415 (rank: 2,244 out of 266,490)
  • Categories:
    • bioinformatics: 701 (rank: 9,787 (tie) out of 23,182)
    • biophysics: 1,440 (rank: 796 out of 9,959)
    • cell biology: 148 (rank: 14,517 (tie) out of 16,957)
    • epidemiology: 120 (rank: 7,329 (tie) out of 9,580)
    • evolutionary biology: 262 (rank: 10,503 (tie) out of 14,430)
    • immunology: 8,053 (rank: 51 out of 11,303)
    • microbiology: 369 (rank: 10,302 (tie) out of 26,516)
    • neuroscience: 1,932 (rank: 4,196 (tie) out of 41,615)
    • systems biology: 390 (rank: 4,229 (tie) out of 7,860)

Downloads per author, site-wide

Preprints

Physical limit to concentration sensing in a changing environment

biophysics more details view paper

No bioRxiv download data for this paper yet.

Measuring the sequence-affinity landscape of antibodies with massively parallel titration curves

biophysics more details view paper
  • Downloaded 1,003 times
  • Download rankings, all-time:
    • Site-wide: 6,506 out of 57,915
    • In biophysics: 176 out of 2,452
  • Year to date:
    • Site-wide: 33,537 out of 57,915
  • Since beginning of last month:
    • Site-wide: 34,657 out of 57,915

Quantifying lymphocyte receptor diversity

immunology more details view paper
  • Downloaded 908 times
  • Download rankings, all-time:
    • Site-wide: 7,616 out of 57,915
    • In immunology: 109 out of 1,388
  • Year to date:
    • Site-wide: 13,849 out of 57,915
  • Since beginning of last month:
    • Site-wide: 16,153 out of 57,915

Detecting T-cell receptors involved in immune responses from single repertoire snapshots

immunology more details view paper
  • Downloaded 850 times
  • Download rankings, all-time:
    • Site-wide: 8,435 out of 57,915
    • In immunology: 125 out of 1,388
  • Year to date:
    • Site-wide: 8,406 out of 57,915
  • Since beginning of last month:
    • Site-wide: 13,584 out of 57,915

IGoR: A Tool For High-Throughput Immune Repertoire Analysis

immunology more details view paper
  • Downloaded 688 times
  • Download rankings, all-time:
    • Site-wide: 11,543 out of 57,915
    • In immunology: 177 out of 1,388
  • Year to date:
    • Site-wide: 31,174 out of 57,915
  • Since beginning of last month:
    • Site-wide: 26,300 out of 57,915

Fierce selection and interference in B-cell repertoire response to chronic HIV-1

immunology more details view paper
  • Downloaded 596 times
  • Download rankings, all-time:
    • Site-wide: 14,025 out of 57,915
    • In immunology: 232 out of 1,388
  • Year to date:
    • Site-wide: 17,014 out of 57,915
  • Since beginning of last month:
    • Site-wide: 27,156 out of 57,915

Quantifying selection in immune receptor repertoires

immunology more details view paper
  • Downloaded 569 times
  • Download rankings, all-time:
    • Site-wide: 15,008 out of 57,915
    • In immunology: 249 out of 1,388
  • Year to date:
    • Site-wide: 51,159 out of 57,915
  • Since beginning of last month:
    • Site-wide: 51,491 out of 57,915

Disorder and the neural representation of complex odors: smelling in the real world

neuroscience more details view paper
  • Downloaded 518 times
  • Download rankings, all-time:
    • Site-wide: 16,888 out of 57,915
    • In neuroscience: 2,751 out of 10,207
  • Year to date:
    • Site-wide: 33,508 out of 57,915
  • Since beginning of last month:
    • Site-wide: 26,891 out of 57,915

Inferring processes underlying B-cell repertoire diversity.

immunology more details view paper
  • Downloaded 496 times
  • Download rankings, all-time:
    • Site-wide: 17,859 out of 57,915
    • In immunology: 302 out of 1,388
  • Year to date:
    • Site-wide: 41,158 out of 57,915
  • Since beginning of last month:
    • Site-wide: 49,509 out of 57,915

Predicting the spectrum of TCR repertoire sharing with a data-driven model of recombination

immunology more details view paper
  • Downloaded 441 times
  • Download rankings, all-time:
    • Site-wide: 20,448 out of 57,915
    • In immunology: 352 out of 1,388
  • Year to date:
    • Site-wide: 20,539 out of 57,915
  • Since beginning of last month:
    • Site-wide: 19,592 out of 57,915

Fluctuating fitness shapes the clone size distribution of immune repertoires

immunology more details view paper
  • Downloaded 441 times
  • Download rankings, all-time:
    • Site-wide: 20,499 out of 57,915
    • In immunology: 351 out of 1,388
  • Year to date:
    • Site-wide: 54,823 out of 57,915
  • Since beginning of last month:
    • Site-wide: 54,505 out of 57,915

Genesis of the αβ T-cell receptor

immunology more details view paper
  • Downloaded 437 times
  • Download rankings, all-time:
    • Site-wide: 20,693 out of 57,915
    • In immunology: 357 out of 1,388
  • Year to date:
    • Site-wide: 11,860 out of 57,915
  • Since beginning of last month:
    • Site-wide: 14,136 out of 57,915

Active degradation of a regulator controls coordination of downstream genes

systems biology more details view paper
  • Downloaded 390 times
  • Download rankings, all-time:
    • Site-wide: 23,434 out of 57,915
    • In systems biology: 712 out of 1,638
  • Year to date:
    • Site-wide: 35,237 out of 57,915
  • Since beginning of last month:
    • Site-wide: 27,471 out of 57,915

Closed-loop estimation of retinal network sensitivity reveals signature of efficient coding

neuroscience more details view paper
  • Downloaded 371 times
  • Download rankings, all-time:
    • Site-wide: 24,690 out of 57,915
    • In neuroscience: 4,158 out of 10,207
  • Year to date:
    • Site-wide: 49,569 out of 57,915
  • Since beginning of last month:
    • Site-wide: 51,567 out of 57,915

Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires

immunology more details view paper
  • Downloaded 371 times
  • Download rankings, all-time:
    • Site-wide: 24,697 out of 57,915
    • In immunology: 438 out of 1,388
  • Year to date:
    • Site-wide: 53,129 out of 57,915
  • Since beginning of last month:
    • Site-wide: 44,065 out of 57,915

Habitat Fluctuations Drive Species Covariation in the Human Microbiota

microbiology more details view paper
  • Downloaded 369 times
  • Download rankings, all-time:
    • Site-wide: 24,773 out of 57,915
    • In microbiology: 1,405 out of 4,604
  • Year to date:
    • Site-wide: 53,233 out of 57,915
  • Since beginning of last month:
    • Site-wide: 49,326 out of 57,915

OLGA: fast computation of generation probabilities of B- and T-cell receptor amino acid sequences and motifs

bioinformatics more details view paper
  • Downloaded 365 times
  • Download rankings, all-time:
    • Site-wide: 25,029 out of 57,915
    • In bioinformatics: 3,460 out of 5,899
  • Year to date:
    • Site-wide: 23,799 out of 57,915
  • Since beginning of last month:
    • Site-wide: 23,011 out of 57,915

Population dynamics of immune repertoires

immunology more details view paper
  • Downloaded 353 times
  • Download rankings, all-time:
    • Site-wide: 25,902 out of 57,915
    • In immunology: 474 out of 1,388
  • Year to date:
    • Site-wide: 43,032 out of 57,915
  • Since beginning of last month:
    • Site-wide: 41,998 out of 57,915

repgenHMM: a dynamic programming tool to infer the rules of immune receptor generation from sequence data

bioinformatics more details view paper
  • Downloaded 336 times
  • Download rankings, all-time:
    • Site-wide: 27,167 out of 57,915
    • In bioinformatics: 3,660 out of 5,899
  • Year to date:
    • Site-wide: 49,907 out of 57,915
  • Since beginning of last month:
    • Site-wide: 44,044 out of 57,915

Separating intrinsic interactions from extrinsic correlations in a network of sensory neurons

neuroscience more details view paper
  • Downloaded 330 times
  • Download rankings, all-time:
    • Site-wide: 27,647 out of 57,915
    • In neuroscience: 4,664 out of 10,207
  • Year to date:
    • Site-wide: 43,669 out of 57,915
  • Since beginning of last month:
    • Site-wide: 34,559 out of 57,915

Random versus maximum entropy models of neural population activity

neuroscience more details view paper
  • Downloaded 307 times
  • Download rankings, all-time:
    • Site-wide: 29,480 out of 57,915
    • In neuroscience: 5,006 out of 10,207
  • Year to date:
    • Site-wide: 54,511 out of 57,915
  • Since beginning of last month:
    • Site-wide: 55,349 out of 57,915

A qualitative model for the integration of conflicting exogenous and endogenous signals by dendritic cells

immunology more details view paper
  • Downloaded 300 times
  • Download rankings, all-time:
    • Site-wide: 30,144 out of 57,915
    • In immunology: 567 out of 1,388
  • Year to date:
    • Site-wide: 50,074 out of 57,915
  • Since beginning of last month:
    • Site-wide: 45,519 out of 57,915

Mouse T cell repertoires as statistical ensembles: overall characterization and age dependence

immunology more details view paper
  • Downloaded 300 times
  • Download rankings, all-time:
    • Site-wide: 30,089 out of 57,915
    • In immunology: 566 out of 1,388
  • Year to date:
    • Site-wide: 53,636 out of 57,915
  • Since beginning of last month:
    • Site-wide: 49,110 out of 57,915

Quantitative Immunology for Physicists

immunology more details view paper
  • Downloaded 296 times
  • Download rankings, all-time:
    • Site-wide: 30,476 out of 57,915
    • In immunology: 579 out of 1,388
  • Year to date:
    • Site-wide: 8,694 out of 57,915
  • Since beginning of last month:
    • Site-wide: 721 out of 57,915

How a well-adapting immune system remembers

immunology more details view paper
  • Downloaded 293 times
  • Download rankings, all-time:
    • Site-wide: 30,676 out of 57,915
    • In immunology: 585 out of 1,388
  • Year to date:
    • Site-wide: 37,866 out of 57,915
  • Since beginning of last month:
    • Site-wide: 40,260 out of 57,915

Method for identification of condition-associated public antigen receptor sequences

immunology more details view paper
  • Downloaded 291 times
  • Download rankings, all-time:
    • Site-wide: 30,921 out of 57,915
    • In immunology: 587 out of 1,388
  • Year to date:
    • Site-wide: 45,862 out of 57,915
  • Since beginning of last month:
    • Site-wide: 42,881 out of 57,915

Precise tracking of vaccine-responding T-cell clones reveals convergent and personalized response in identical twins

immunology more details view paper
  • Downloaded 277 times
  • Download rankings, all-time:
    • Site-wide: 32,233 out of 57,915
    • In immunology: 613 out of 1,388
  • Year to date:
    • Site-wide: 40,409 out of 57,915
  • Since beginning of last month:
    • Site-wide: 47,835 out of 57,915

Diversity of immune strategies explained by adaptation to pathogen statistics

evolutionary biology more details view paper
  • Downloaded 262 times
  • Download rankings, all-time:
    • Site-wide: 33,687 out of 57,915
    • In evolutionary biology: 2,577 out of 3,969
  • Year to date:
    • Site-wide: 53,706 out of 57,915
  • Since beginning of last month:
    • Site-wide: 51,349 out of 57,915

Physical epistatic landscape of antibody binding affinity

biophysics more details view paper
  • Downloaded 226 times
  • Download rankings, all-time:
    • Site-wide: 37,358 out of 57,915
    • In biophysics: 1,527 out of 2,452
  • Year to date:
    • Site-wide: 38,149 out of 57,915
  • Since beginning of last month:
    • Site-wide: 39,975 out of 57,915

A simple model for low variability in neural spike trains

neuroscience more details view paper
  • Downloaded 218 times
  • Download rankings, all-time:
    • Site-wide: 38,290 out of 57,915
    • In neuroscience: 6,604 out of 10,207
  • Year to date:
    • Site-wide: 37,302 out of 57,915
  • Since beginning of last month:
    • Site-wide: 48,370 out of 57,915

Size and structure of the sequence space of repeat proteins

biophysics more details view paper
  • Downloaded 211 times
  • Download rankings, all-time:
    • Site-wide: 39,147 out of 57,915
    • In biophysics: 1,616 out of 2,452
  • Year to date:
    • Site-wide: 14,391 out of 57,915
  • Since beginning of last month:
    • Site-wide: 23,979 out of 57,915

Blindfold learning of an accurate neural metric

neuroscience more details view paper
  • Downloaded 188 times
  • Download rankings, all-time:
    • Site-wide: 41,816 out of 57,915
    • In neuroscience: 7,260 out of 10,207
  • Year to date:
    • Site-wide: 50,076 out of 57,915
  • Since beginning of last month:
    • Site-wide: 56,066 out of 57,915

Receptor crosstalk improves concentration sensing of multiple ligands

cell biology more details view paper
  • Downloaded 148 times
  • Download rankings, all-time:
    • Site-wide: 46,809 out of 57,915
    • In cell biology: 2,250 out of 2,749
  • Year to date:
    • Site-wide: 44,382 out of 57,915
  • Since beginning of last month:
    • Site-wide: 40,629 out of 57,915

How many different clonotypes do immune repertoires contain?

immunology more details view paper
  • Downloaded 146 times
  • Download rankings, all-time:
    • Site-wide: 47,015 out of 57,915
    • In immunology: 1,033 out of 1,388
  • Year to date:
    • Site-wide: 22,716 out of 57,915
  • Since beginning of last month:
    • Site-wide: 2,427 out of 57,915

Multi-lineage evolution in viral populations driven by host immune systems

epidemiology more details view paper
  • Downloaded 120 times
  • Download rankings, all-time:
    • Site-wide: 50,252 out of 57,915
    • In epidemiology: 1,139 out of 1,556
  • Year to date:
    • Site-wide: 27,906 out of 57,915
  • Since beginning of last month:
    • Site-wide: 7,035 out of 57,915

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