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Author: Thierry Mora

Rankings

  • All-time downloads: 21,945 (rank: 2,542 out of 393,295)
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    • bioinformatics: 1,272 (rank: 9,033 (tie) out of 33,499)
    • biophysics: 2,423 (rank: 862 out of 16,301)
    • cell biology: 229 (rank: 22,809 (tie) out of 29,452)
    • epidemiology: 566 (rank: 3,146 (tie) out of 9,544)
    • evolutionary biology: 320 (rank: 14,316 (tie) out of 20,102)
    • genetics: 185 (rank: 32,584 (tie) out of 36,121)
    • immunology: 13,390 (rank: 221 (tie) out of 21,958)
    • microbiology: 421 (rank: 20,925 (tie) out of 44,869)
    • neuroscience: 2,662 (rank: 5,721 (tie) out of 65,842)
    • systems biology: 477 (rank: 6,285 (tie) out of 11,532)

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Preprints

Learning the heterogeneous hypermutation landscape of immunoglobulins from high-throughput repertoire data

immunology more details view paper

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Longitudinal high-throughput TCR repertoire profiling reveals the dynamics of T cell memory formation after mild COVID-19 infection

immunology more details view paper
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Quantifying lymphocyte receptor diversity

immunology more details view paper
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Measuring the sequence-affinity landscape of antibodies with massively parallel titration curves

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Detecting T-cell receptors involved in immune responses from single repertoire snapshots

immunology more details view paper
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Genesis of the αβ T-cell receptor

immunology more details view paper
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IGoR: A Tool For High-Throughput Immune Repertoire Analysis

immunology more details view paper
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Fierce selection and interference in B-cell repertoire response to chronic HIV-1

immunology more details view paper
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Quantitative Immunology for Physicists

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Disorder and the neural representation of complex odors: smelling in the real world

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Predicting the spectrum of TCR repertoire sharing with a data-driven model of recombination

immunology more details view paper
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Quantifying selection in immune receptor repertoires

immunology more details view paper
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Comprehensive analysis of antiviral adaptive immunity formation and reactivation down to single-cell level

immunology more details view paper
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Inferring processes underlying B-cell repertoire diversity.

immunology more details view paper
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Multi-lineage evolution in viral populations driven by host immune systems

epidemiology more details view paper
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OLGA: fast computation of generation probabilities of B- and T-cell receptor amino acid sequences and motifs

bioinformatics more details view paper
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Fluctuating fitness shapes the clone size distribution of immune repertoires

immunology more details view paper
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Active degradation of a regulator controls coordination of downstream genes

systems biology more details view paper
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Separating intrinsic interactions from extrinsic correlations in a network of sensory neurons

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Closed-loop estimation of retinal network sensitivity reveals signature of efficient coding

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Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires

immunology more details view paper
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Population variability in the generation and thymic selection of T-cell repertoires

immunology more details view paper
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How many different clonotypes do immune repertoires contain?

immunology more details view paper
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Population dynamics of immune repertoires

immunology more details view paper
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Habitat Fluctuations Drive Species Covariation in the Human Microbiota

microbiology more details view paper
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How a well-adapting immune system remembers

immunology more details view paper
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repgenHMM: a dynamic programming tool to infer the rules of immune receptor generation from sequence data

bioinformatics more details view paper
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Random versus maximum entropy models of neural population activity

neuroscience more details view paper
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Precise tracking of vaccine-responding T-cell clones reveals convergent and personalized response in identical twins

immunology more details view paper
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A qualitative model for the integration of conflicting exogenous and endogenous signals by dendritic cells

immunology more details view paper
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Mouse T cell repertoires as statistical ensembles: overall characterization and age dependence

immunology more details view paper
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A simple model for low variability in neural spike trains

neuroscience more details view paper
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Flexible machine learning prediction of antigen presentation for rare and common HLA-I alleles

bioinformatics more details view paper
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Physical epistatic landscape of antibody binding affinity

biophysics more details view paper
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Diversity of immune strategies explained by adaptation to pathogen statistics

evolutionary biology more details view paper
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Inferring the immune response from repertoire sequencing

immunology more details view paper
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Size and structure of the sequence space of repeat proteins

biophysics more details view paper
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Single molecule microscopy reveals key physical features of repair foci in living cells

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Blindfold learning of an accurate neural metric

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Receptor crosstalk improves concentration sensing of multiple ligands

cell biology more details view paper
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Optimal prediction with resource constraints using the information bottleneck

biophysics more details view paper
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Immune fingerprinting

genetics more details view paper
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On generative models of T-cell receptor sequences

immunology more details view paper
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Physical limit to concentration sensing in a changing environment

biophysics more details view paper
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A new inference approach for training shallow and deep generalized linear models of noisy interacting neurons

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