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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 62,747 bioRxiv papers from 278,434 authors.

Author: Thierry Mora

  • Most recently observed institution: Ecole normale superieure

Rankings

  • All-time downloads: 13,852 (rank: 2,360 (tie) out of 278,434)
  • Categories:
    • bioinformatics: 725 (rank: 10,009 (tie) out of 24,395)
    • biophysics: 1,579 (rank: 764 out of 10,886)
    • cell biology: 158 (rank: 15,651 (tie) out of 18,453)
    • epidemiology: 191 (rank: 6,021 (tie) out of 9,529)
    • evolutionary biology: 271 (rank: 10,870 (tie) out of 15,246)
    • immunology: 8,127 (rank: 52 (tie) out of 12,556)
    • microbiology: 377 (rank: 11,147 (tie) out of 28,540)
    • neuroscience: 2,022 (rank: 4,378 (tie) out of 45,895)
    • systems biology: 402 (rank: 4,588 (tie) out of 8,440)

Downloads per author, site-wide

Preprints

Measuring the sequence-affinity landscape of antibodies with massively parallel titration curves

biophysics more details view paper
  • Downloaded 1,015 times
  • Download rankings, all-time:
    • Site-wide: 6,925 out of 62,747
    • In biophysics: 199 out of 2,668
  • Year to date:
    • Site-wide: 37,212 out of 62,747
  • Since beginning of last month:
    • Site-wide: 45,302 out of 62,747

Quantifying lymphocyte receptor diversity

immunology more details view paper
  • Downloaded 953 times
  • Download rankings, all-time:
    • Site-wide: 7,646 out of 62,747
    • In immunology: 114 out of 1,562
  • Year to date:
    • Site-wide: 13,889 out of 62,747
  • Since beginning of last month:
    • Site-wide: 11,726 out of 62,747

Detecting T-cell receptors involved in immune responses from single repertoire snapshots

immunology more details view paper
  • Downloaded 878 times
  • Download rankings, all-time:
    • Site-wide: 8,719 out of 62,747
    • In immunology: 137 out of 1,562
  • Year to date:
    • Site-wide: 9,758 out of 62,747
  • Since beginning of last month:
    • Site-wide: 26,316 out of 62,747

IGoR: A Tool For High-Throughput Immune Repertoire Analysis

immunology more details view paper
  • Downloaded 700 times
  • Download rankings, all-time:
    • Site-wide: 12,211 out of 62,747
    • In immunology: 199 out of 1,562
  • Year to date:
    • Site-wide: 35,252 out of 62,747
  • Since beginning of last month:
    • Site-wide: 47,386 out of 62,747

Fierce selection and interference in B-cell repertoire response to chronic HIV-1

immunology more details view paper
  • Downloaded 622 times
  • Download rankings, all-time:
    • Site-wide: 14,383 out of 62,747
    • In immunology: 250 out of 1,562
  • Year to date:
    • Site-wide: 18,567 out of 62,747
  • Since beginning of last month:
    • Site-wide: 30,778 out of 62,747

Quantifying selection in immune receptor repertoires

immunology more details view paper
  • Downloaded 572 times
  • Download rankings, all-time:
    • Site-wide: 16,148 out of 62,747
    • In immunology: 282 out of 1,562
  • Year to date:
    • Site-wide: 57,322 out of 62,747
  • Since beginning of last month:
    • Site-wide: 60,598 out of 62,747

Disorder and the neural representation of complex odors: smelling in the real world

neuroscience more details view paper
  • Downloaded 542 times
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    • Site-wide: 17,372 out of 62,747
    • In neuroscience: 2,872 out of 11,207
  • Year to date:
    • Site-wide: 34,300 out of 62,747
  • Since beginning of last month:
    • Site-wide: 23,803 out of 62,747

Inferring processes underlying B-cell repertoire diversity.

immunology more details view paper
  • Downloaded 503 times
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    • Site-wide: 19,072 out of 62,747
    • In immunology: 329 out of 1,562
  • Year to date:
    • Site-wide: 46,622 out of 62,747
  • Since beginning of last month:
    • Site-wide: 56,749 out of 62,747

Genesis of the αβ T-cell receptor

immunology more details view paper
  • Downloaded 493 times
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    • Site-wide: 19,558 out of 62,747
    • In immunology: 338 out of 1,562
  • Year to date:
    • Site-wide: 11,452 out of 62,747
  • Since beginning of last month:
    • Site-wide: 10,732 out of 62,747

Predicting the spectrum of TCR repertoire sharing with a data-driven model of recombination

immunology more details view paper
  • Downloaded 460 times
  • Download rankings, all-time:
    • Site-wide: 21,243 out of 62,747
    • In immunology: 377 out of 1,562
  • Year to date:
    • Site-wide: 23,035 out of 62,747
  • Since beginning of last month:
    • Site-wide: 27,545 out of 62,747

Fluctuating fitness shapes the clone size distribution of immune repertoires

immunology more details view paper
  • Downloaded 445 times
  • Download rankings, all-time:
    • Site-wide: 22,094 out of 62,747
    • In immunology: 394 out of 1,562
  • Year to date:
    • Site-wide: 60,027 out of 62,747
  • Since beginning of last month:
    • Site-wide: 60,176 out of 62,747

Active degradation of a regulator controls coordination of downstream genes

systems biology more details view paper
  • Downloaded 402 times
  • Download rankings, all-time:
    • Site-wide: 24,686 out of 62,747
    • In systems biology: 757 out of 1,783
  • Year to date:
    • Site-wide: 39,181 out of 62,747
  • Since beginning of last month:
    • Site-wide: 39,932 out of 62,747

Closed-loop estimation of retinal network sensitivity reveals signature of efficient coding

neuroscience more details view paper
  • Downloaded 384 times
  • Download rankings, all-time:
    • Site-wide: 25,922 out of 62,747
    • In neuroscience: 4,415 out of 11,207
  • Year to date:
    • Site-wide: 52,237 out of 62,747
  • Since beginning of last month:
    • Site-wide: 40,167 out of 62,747

OLGA: fast computation of generation probabilities of B- and T-cell receptor amino acid sequences and motifs

bioinformatics more details view paper
  • Downloaded 381 times
  • Download rankings, all-time:
    • Site-wide: 26,168 out of 62,747
    • In bioinformatics: 3,574 out of 6,251
  • Year to date:
    • Site-wide: 26,868 out of 62,747
  • Since beginning of last month:
    • Site-wide: 41,771 out of 62,747

Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires

immunology more details view paper
  • Downloaded 380 times
  • Download rankings, all-time:
    • Site-wide: 26,204 out of 62,747
    • In immunology: 485 out of 1,562
  • Year to date:
    • Site-wide: 57,095 out of 62,747
  • Since beginning of last month:
    • Site-wide: 55,222 out of 62,747

Habitat Fluctuations Drive Species Covariation in the Human Microbiota

microbiology more details view paper
  • Downloaded 377 times
  • Download rankings, all-time:
    • Site-wide: 26,403 out of 62,747
    • In microbiology: 1,526 out of 5,025
  • Year to date:
    • Site-wide: 57,712 out of 62,747
  • Since beginning of last month:
    • Site-wide: 51,107 out of 62,747

Quantitative Immunology for Physicists

immunology more details view paper
  • Downloaded 366 times
  • Download rankings, all-time:
    • Site-wide: 27,215 out of 62,747
    • In immunology: 510 out of 1,562
  • Year to date:
    • Site-wide: 8,200 out of 62,747
  • Since beginning of last month:
    • Site-wide: 7,517 out of 62,747

Population dynamics of immune repertoires

immunology more details view paper
  • Downloaded 364 times
  • Download rankings, all-time:
    • Site-wide: 27,411 out of 62,747
    • In immunology: 515 out of 1,562
  • Year to date:
    • Site-wide: 47,118 out of 62,747
  • Since beginning of last month:
    • Site-wide: 39,646 out of 62,747

Separating intrinsic interactions from extrinsic correlations in a network of sensory neurons

neuroscience more details view paper
  • Downloaded 349 times
  • Download rankings, all-time:
    • Site-wide: 28,626 out of 62,747
    • In neuroscience: 4,867 out of 11,207
  • Year to date:
    • Site-wide: 44,412 out of 62,747
  • Since beginning of last month:
    • Site-wide: 35,608 out of 62,747

repgenHMM: a dynamic programming tool to infer the rules of immune receptor generation from sequence data

bioinformatics more details view paper
  • Downloaded 344 times
  • Download rankings, all-time:
    • Site-wide: 29,035 out of 62,747
    • In bioinformatics: 3,834 out of 6,251
  • Year to date:
    • Site-wide: 54,718 out of 62,747
  • Since beginning of last month:
    • Site-wide: 57,625 out of 62,747

Random versus maximum entropy models of neural population activity

neuroscience more details view paper
  • Downloaded 316 times
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    • Site-wide: 31,425 out of 62,747
    • In neuroscience: 5,373 out of 11,207
  • Year to date:
    • Site-wide: 58,672 out of 62,747
  • Since beginning of last month:
    • Site-wide: 56,594 out of 62,747

Mouse T cell repertoires as statistical ensembles: overall characterization and age dependence

immunology more details view paper
  • Downloaded 309 times
  • Download rankings, all-time:
    • Site-wide: 32,102 out of 62,747
    • In immunology: 619 out of 1,562
  • Year to date:
    • Site-wide: 57,805 out of 62,747
  • Since beginning of last month:
    • Site-wide: 52,765 out of 62,747

A qualitative model for the integration of conflicting exogenous and endogenous signals by dendritic cells

immunology more details view paper
  • Downloaded 309 times
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    • Site-wide: 32,091 out of 62,747
    • In immunology: 618 out of 1,562
  • Year to date:
    • Site-wide: 54,101 out of 62,747
  • Since beginning of last month:
    • Site-wide: 47,830 out of 62,747

How a well-adapting immune system remembers

immunology more details view paper
  • Downloaded 307 times
  • Download rankings, all-time:
    • Site-wide: 32,286 out of 62,747
    • In immunology: 623 out of 1,562
  • Year to date:
    • Site-wide: 40,910 out of 62,747
  • Since beginning of last month:
    • Site-wide: 37,160 out of 62,747

Precise tracking of vaccine-responding T-cell clones reveals convergent and personalized response in identical twins

immunology more details view paper
  • Downloaded 290 times
  • Download rankings, all-time:
    • Site-wide: 33,891 out of 62,747
    • In immunology: 663 out of 1,562
  • Year to date:
    • Site-wide: 43,937 out of 62,747
  • Since beginning of last month:
    • Site-wide: 36,367 out of 62,747

Diversity of immune strategies explained by adaptation to pathogen statistics

evolutionary biology more details view paper
  • Downloaded 271 times
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    • Site-wide: 35,798 out of 62,747
    • In evolutionary biology: 2,692 out of 4,228
  • Year to date:
    • Site-wide: 57,578 out of 62,747
  • Since beginning of last month:
    • Site-wide: 51,757 out of 62,747

Size and structure of the sequence space of repeat proteins

biophysics more details view paper
  • Downloaded 240 times
  • Download rankings, all-time:
    • Site-wide: 39,221 out of 62,747
    • In biophysics: 1,613 out of 2,668
  • Year to date:
    • Site-wide: 15,689 out of 62,747
  • Since beginning of last month:
    • Site-wide: 27,683 out of 62,747

Physical epistatic landscape of antibody binding affinity

biophysics more details view paper
  • Downloaded 238 times
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    • Site-wide: 39,436 out of 62,747
    • In biophysics: 1,632 out of 2,668
  • Year to date:
    • Site-wide: 41,730 out of 62,747
  • Since beginning of last month:
    • Site-wide: 41,561 out of 62,747

A simple model for low variability in neural spike trains

neuroscience more details view paper
  • Downloaded 234 times
  • Download rankings, all-time:
    • Site-wide: 39,827 out of 62,747
    • In neuroscience: 6,944 out of 11,207
  • Year to date:
    • Site-wide: 39,898 out of 62,747
  • Since beginning of last month:
    • Site-wide: 35,232 out of 62,747

Blindfold learning of an accurate neural metric

neuroscience more details view paper
  • Downloaded 197 times
  • Download rankings, all-time:
    • Site-wide: 44,437 out of 62,747
    • In neuroscience: 7,767 out of 11,207
  • Year to date:
    • Site-wide: 54,163 out of 62,747
  • Since beginning of last month:
    • Site-wide: 51,466 out of 62,747

Multi-lineage evolution in viral populations driven by host immune systems

epidemiology more details view paper
  • Downloaded 191 times
  • Download rankings, all-time:
    • Site-wide: 45,184 out of 62,747
    • In epidemiology: 876 out of 1,556
  • Year to date:
    • Site-wide: 21,208 out of 62,747
  • Since beginning of last month:
    • Site-wide: 8,744 out of 62,747

How many different clonotypes do immune repertoires contain?

immunology more details view paper
  • Downloaded 176 times
  • Download rankings, all-time:
    • Site-wide: 47,079 out of 62,747
    • In immunology: 1,030 out of 1,562
  • Year to date:
    • Site-wide: 23,242 out of 62,747
  • Since beginning of last month:
    • Site-wide: 27,907 out of 62,747

Receptor crosstalk improves concentration sensing of multiple ligands

cell biology more details view paper
  • Downloaded 158 times
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    • Site-wide: 49,622 out of 62,747
    • In cell biology: 2,430 out of 2,992
  • Year to date:
    • Site-wide: 48,537 out of 62,747
  • Since beginning of last month:
    • Site-wide: 56,721 out of 62,747

Physical limit to concentration sensing in a changing environment

biophysics more details view paper
  • Downloaded 86 times
  • Download rankings, all-time:
    • Site-wide: 58,334 out of 62,747
    • In biophysics: 2,500 out of 2,668
  • Year to date:
    • Site-wide: 45,011 out of 62,747
  • Since beginning of last month:
    • Site-wide: 39,691 out of 62,747

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