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Author: James Hadfield

Rankings

  • All-time downloads: 30,460 (rank: 6,078 )
  • Categories:
    • bioinformatics: 1,071 (rank: 14,949 (tie) )
    • cancer biology: 333 (rank: 26,665 (tie) )
    • epidemiology: 12,614 (rank: 1,227 )
    • evolutionary biology: 3,339 (rank: 1,213 )
    • genomics: 3,177 (rank: 8,149 (tie) )
    • infectious diseases: 7,572 (rank: 6,427 (tie) )
    • microbiology: 2,354 (rank: 6,847 (tie) )

Downloads per author, site-wide

Preprints

Cryptic transmission of SARS-CoV-2 in Washington State

epidemiology more details view paper
  • Downloaded 9,523 times
  • Download rankings, all-time:
    • Site-wide: 1,011
    • In epidemiology: 134
  • Year to date:
    • Site-wide: 8,423
  • Since beginning of last month:
    • Site-wide: 63,938

Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand

infectious diseases more details view paper
  • Downloaded 3,976 times
  • Download rankings, all-time:
    • Site-wide: 3,274
    • In infectious diseases: 693
  • Year to date:
    • Site-wide: 13,661
  • Since beginning of last month:
    • Site-wide: 51,304

A phylodynamic workflow to rapidly gain insights into the dispersal history and dynamics of SARS-CoV-2 lineages

evolutionary biology more details view paper
  • Downloaded 2,489 times
  • Download rankings, all-time:
    • Site-wide: 6,382
    • In evolutionary biology: 140
  • Year to date:
    • Site-wide: 13,871
  • Since beginning of last month:
    • Site-wide: 26,213

Bioanalyzer chips can be used interchangeably for many analyses of DNA or RNA

genomics more details view paper
  • Downloaded 1,929 times
  • Download rankings, all-time:
    • Site-wide: 9,267
    • In genomics: 942
  • Year to date:
    • Site-wide: 15,531
  • Since beginning of last month:
    • Site-wide: None

Viral genome sequencing places White House COVID-19 outbreak into phylogenetic context

epidemiology more details view paper
  • Downloaded 1,719 times
  • Download rankings, all-time:
    • Site-wide: 11,012
    • In epidemiology: 810
  • Year to date:
    • Site-wide: 17,470
  • Since beginning of last month:
    • Site-wide: 79,564

High-throughput sequencing of SARS-CoV-2 in wastewater provides insights into circulating variants

infectious diseases more details view paper
  • Downloaded 1,651 times
  • Download rankings, all-time:
    • Site-wide: 11,685
    • In infectious diseases: 1,479
  • Year to date:
    • Site-wide: 1,608
  • Since beginning of last month:
    • Site-wide: 49,708

An emergent clade of SARS-CoV-2 linked to returned travellers from Iran

microbiology more details view paper
  • Downloaded 1,540 times
  • Download rankings, all-time:
    • Site-wide: 12,847
    • In microbiology: 750
  • Year to date:
    • Site-wide: 63,832
  • Since beginning of last month:
    • Site-wide: None

The Seattle Flu Study: a multi-arm community-based prospective study protocol for assessing influenza prevalence, transmission, and genomic epidemiology

infectious diseases more details view paper
  • Downloaded 1,404 times
  • Download rankings, all-time:
    • Site-wide: 14,834
    • In infectious diseases: 1,659
  • Year to date:
    • Site-wide: 68,431
  • Since beginning of last month:
    • Site-wide: 94,182

Phandango: an interactive viewer for bacterial population genomics.

bioinformatics more details view paper
  • Downloaded 1,071 times
  • Download rankings, all-time:
    • Site-wide: 22,194
    • In bioinformatics: 2,549
  • Year to date:
    • Site-wide: 77,343
  • Since beginning of last month:
    • Site-wide: None

Phylodynamics reveals the role of human travel and contact tracing in controlling COVID-19 in four island nations

epidemiology more details view paper
  • Downloaded 868 times
  • Download rankings, all-time:
    • Site-wide: 30,049
    • In epidemiology: 1,607
  • Year to date:
    • Site-wide: 13,056
  • Since beginning of last month:
    • Site-wide: 46,019

High-resolution influenza mapping of a city reveals socioeconomic determinants of transmission within and between urban quarters

microbiology more details view paper
  • Downloaded 814 times
  • Download rankings, all-time:
    • Site-wide: 32,806
    • In microbiology: 1,976
  • Year to date:
    • Site-wide: 92,757
  • Since beginning of last month:
    • Site-wide: 56,233

Integrated clonal analysis reveals circulating tumor DNA in urine and plasma of glioma patients

genomics more details view paper
  • Downloaded 738 times
  • Download rankings, all-time:
    • Site-wide: 37,687
    • In genomics: 3,132
  • Year to date:
    • Site-wide: 18,538
  • Since beginning of last month:
    • Site-wide: 18,014

Nextstrain: real-time tracking of pathogen evolution

evolutionary biology more details view paper
  • Downloaded 584 times
  • Download rankings, all-time:
    • Site-wide: 51,086
    • In evolutionary biology: 2,570
  • Year to date:
    • Site-wide: 89,183
  • Since beginning of last month:
    • Site-wide: 42,543

The power and limitations of genomics to track COVID-19 outbreaks: a case study from New Zealand

infectious diseases more details view paper
  • Downloaded 541 times
  • Download rankings, all-time:
    • Site-wide: 56,021
    • In infectious diseases: 3,212
  • Year to date:
    • Site-wide: 29,904
  • Since beginning of last month:
    • Site-wide: 89,350

Evolution and rapid spread of a reassortant A(H3N2) virus that predominated the 2017-2018 influenza season

genomics more details view paper
  • Downloaded 510 times
  • Download rankings, all-time:
    • Site-wide: 60,054
    • In genomics: 4,382
  • Year to date:
    • Site-wide: 149,204
  • Since beginning of last month:
    • Site-wide: 119,536

Independence of HIF1a and androgen signaling pathways in prostate cancer

cancer biology more details view paper
  • Downloaded 333 times
  • Download rankings, all-time:
    • Site-wide: 90,882
    • In cancer biology: 2,685
  • Year to date:
    • Site-wide: 110,051
  • Since beginning of last month:
    • Site-wide: 109,941

Operationalizing genomic epidemiology during the Nord-Kivu Ebola outbreak, Democratic Republic of the Congo.

epidemiology more details view paper
  • Downloaded 303 times
  • Download rankings, all-time:
    • Site-wide: 97,518
    • In epidemiology: 4,103
  • Year to date:
    • Site-wide: 66,798
  • Since beginning of last month:
    • Site-wide: 96,475

Characterising the epidemic spread of Influenza A/H3N2 within a city through phylogenetics

evolutionary biology more details view paper
  • Downloaded 266 times
  • Download rankings, all-time:
    • Site-wide: 106,341
    • In evolutionary biology: 5,402
  • Year to date:
    • Site-wide: 145,328
  • Since beginning of last month:
    • Site-wide: 85,714

Real-time genomics to track COVID-19 post-elimination border incursions in Aotearoa New Zealand

epidemiology more details view paper
  • Downloaded 201 times
  • Download rankings, all-time:
    • Site-wide: 122,418
    • In epidemiology: 5,135
  • Year to date:
    • Site-wide: 30,684
  • Since beginning of last month:
    • Site-wide: 96,346

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