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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 48,029 bioRxiv papers from 215,369 authors.

Author: Antonis Rokas

Rankings

  • All-time downloads: 11,395 (rank: 2,160 out of 215,369)
  • Categories:
    • bioinformatics: 830 (rank: 6,783 (tie) out of 19,497)
    • evolutionary biology: 5,854 (rank: 146 out of 12,558)
    • genomics: 2,527 (rank: 4,218 out of 25,614)
    • microbiology: 1,076 (rank: 1,758 (tie) out of 20,534)
    • plant biology: 1,108 (rank: 897 (tie) out of 7,070)

Downloads per author, site-wide

Preprints

Variation and selection on codon usage bias across an entire subphylum

evolutionary biology more details view paper

No bioRxiv download data for this paper yet.

Evaluating Fast Maximum Likelihood-Based Phylogenetic Programs Using Empirical Phylogenomic Data Sets

evolutionary biology more details view paper
  • Downloaded 1,170 times
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    • Site-wide: 3,903 out of 48,029
    • In evolutionary biology: 229 out of 3,465
  • Year to date:
    • Site-wide: 25,688 out of 48,029
  • Since beginning of last month:
    • Site-wide: 22,909 out of 48,029

A global co-expression network approach for connecting genes to specialized metabolic pathways in plants

plant biology more details view paper
  • Downloaded 1,108 times
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    • Site-wide: 4,230 out of 48,029
    • In plant biology: 79 out of 1,298
  • Year to date:
    • Site-wide: 30,273 out of 48,029
  • Since beginning of last month:
    • Site-wide: 22,981 out of 48,029

RNAseq in the mosquito maxillary palp: a little antennal RNA goes a long way

genomics more details view paper
  • Downloaded 1,036 times
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    • Site-wide: 4,738 out of 48,029
    • In genomics: 844 out of 3,522
  • Year to date:
    • Site-wide: 23,998 out of 48,029
  • Since beginning of last month:
    • Site-wide: 17,279 out of 48,029

in silico Whole Genome Sequencer & Analyzer (iWGS): a computational pipeline to guide the design and analysis of de novo genome sequencing studies

bioinformatics more details view paper
  • Downloaded 830 times
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    • Site-wide: 6,676 out of 48,029
    • In bioinformatics: 1,242 out of 5,096
  • Year to date:
    • Site-wide: 33,700 out of 48,029
  • Since beginning of last month:
    • Site-wide: 42,809 out of 48,029

Genome wide association analysis uncovers variants for reproductive variation across dog breeds and links to domestication

evolutionary biology more details view paper
  • Downloaded 784 times
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    • Site-wide: 7,247 out of 48,029
    • In evolutionary biology: 537 out of 3,465
  • Year to date:
    • Site-wide: 3,518 out of 48,029
  • Since beginning of last month:
    • Site-wide: 5,296 out of 48,029

Computing the Internode Certainty and related measures from partial gene trees.

evolutionary biology more details view paper
  • Downloaded 684 times
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    • Site-wide: 8,867 out of 48,029
    • In evolutionary biology: 681 out of 3,465
  • Year to date:
    • Site-wide: 27,654 out of 48,029
  • Since beginning of last month:
    • Site-wide: 27,816 out of 48,029

Drivers of genetic diversity in secondary metabolic gene clusters within a fungal species

genomics more details view paper
  • Downloaded 659 times
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    • Site-wide: 9,305 out of 48,029
    • In genomics: 1,372 out of 3,522
  • Year to date:
    • Site-wide: 33,260 out of 48,029
  • Since beginning of last month:
    • Site-wide: 27,921 out of 48,029

Eukaryotic acquisition of a bacterial operon

evolutionary biology more details view paper
  • Downloaded 600 times
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    • Site-wide: 10,602 out of 48,029
    • In evolutionary biology: 823 out of 3,465
  • Year to date:
    • Site-wide: 3,929 out of 48,029
  • Since beginning of last month:
    • Site-wide: 3,588 out of 48,029

A robust phylogenomic timetree for biotechnologically and medically important fungi in the genera Aspergillus and Penicillium

evolutionary biology more details view paper
  • Downloaded 552 times
  • Download rankings, all-time:
    • Site-wide: 11,791 out of 48,029
    • In evolutionary biology: 926 out of 3,465
  • Year to date:
    • Site-wide: 8,551 out of 48,029
  • Since beginning of last month:
    • Site-wide: 6,158 out of 48,029

Quartet-based computations of internode certainty provide accurate and robust measures of phylogenetic incongruence

evolutionary biology more details view paper
  • Downloaded 539 times
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    • Site-wide: 12,177 out of 48,029
    • In evolutionary biology: 954 out of 3,465
  • Year to date:
    • Site-wide: 24,703 out of 48,029
  • Since beginning of last month:
    • Site-wide: 27,543 out of 48,029

Reconstructing the backbone of the Saccharomycotina yeast phylogeny using genome-scale data

evolutionary biology more details view paper
  • Downloaded 336 times
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    • Site-wide: 20,463 out of 48,029
    • In evolutionary biology: 1,713 out of 3,465
  • Year to date:
    • Site-wide: 43,359 out of 48,029
  • Since beginning of last month:
    • Site-wide: 41,609 out of 48,029

Examination of signatures of recent positive selection on genes involved in human sialic acid biology

evolutionary biology more details view paper
  • Downloaded 308 times
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    • Site-wide: 22,165 out of 48,029
    • In evolutionary biology: 1,863 out of 3,465
  • Year to date:
    • Site-wide: 26,052 out of 48,029
  • Since beginning of last month:
    • Site-wide: 19,272 out of 48,029

Extensive loss of cell cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts

evolutionary biology more details view paper
  • Downloaded 295 times
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    • Site-wide: 22,942 out of 48,029
    • In evolutionary biology: 1,935 out of 3,465
  • Year to date:
    • Site-wide: 2,206 out of 48,029
  • Since beginning of last month:
    • Site-wide: 4,721 out of 48,029

A novel homology-based algorithm for the identification of physically linked clusters of paralogous genes

genomics more details view paper
  • Downloaded 292 times
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    • Site-wide: 23,188 out of 48,029
    • In genomics: 2,459 out of 3,522
  • Year to date:
    • Site-wide: 39,568 out of 48,029
  • Since beginning of last month:
    • Site-wide: 42,087 out of 48,029

Evidence for loss and adaptive reacquisition of alcoholic fermentation in an early-derived fructophilic yeast lineage

genomics more details view paper
  • Downloaded 277 times
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    • Site-wide: 24,206 out of 48,029
    • In genomics: 2,515 out of 3,522
  • Year to date:
    • Site-wide: 44,939 out of 48,029
  • Since beginning of last month:
    • Site-wide: 42,789 out of 48,029

Genomic features and evolution of the conditionally dispensable chromosome in the tangerine pathotype of Alternaria alternata

microbiology more details view paper
  • Downloaded 277 times
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    • Site-wide: 24,209 out of 48,029
    • In microbiology: 1,392 out of 3,711
  • Year to date:
    • Site-wide: 32,410 out of 48,029
  • Since beginning of last month:
    • Site-wide: 26,253 out of 48,029

integRATE: a desirability-based data integration framework for the prioritization of candidate genes across heterogeneous omics and its application to preterm birth

genomics more details view paper
  • Downloaded 263 times
  • Download rankings, all-time:
    • Site-wide: 25,247 out of 48,029
    • In genomics: 2,578 out of 3,522
  • Year to date:
    • Site-wide: 28,113 out of 48,029
  • Since beginning of last month:
    • Site-wide: 25,704 out of 48,029

Copy number variation in fungi and its implications for wine yeast genetic diversity and adaptation

microbiology more details view paper
  • Downloaded 222 times
  • Download rankings, all-time:
    • Site-wide: 28,490 out of 48,029
    • In microbiology: 1,749 out of 3,711
  • Year to date:
    • Site-wide: 34,377 out of 48,029
  • Since beginning of last month:
    • Site-wide: 31,805 out of 48,029

A LaeA- and BrlA-dependent cellular network governs tissue-specific secondary metabolism in the human pathogen Aspergillus fumigatus

microbiology more details view paper
  • Downloaded 221 times
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    • Site-wide: 28,596 out of 48,029
    • In microbiology: 1,759 out of 3,711
  • Year to date:
    • Site-wide: 44,100 out of 48,029
  • Since beginning of last month:
    • Site-wide: 44,966 out of 48,029

Signatures of recent positive selection in enhancers across 41 human tissues

evolutionary biology more details view paper
  • Downloaded 212 times
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    • Site-wide: 29,418 out of 48,029
    • In evolutionary biology: 2,418 out of 3,465
  • Year to date:
    • Site-wide: 3,796 out of 48,029
  • Since beginning of last month:
    • Site-wide: 21,357 out of 48,029

Characterizing the pathogenic, genomic, and chemical traits of Aspergillus fischeri, a close relative of the major human fungal pathogen Aspergillus fumigatus

microbiology more details view paper
  • Downloaded 208 times
  • Download rankings, all-time:
    • Site-wide: 29,788 out of 48,029
    • In microbiology: 1,870 out of 3,711
  • Year to date:
    • Site-wide: 20,021 out of 48,029
  • Since beginning of last month:
    • Site-wide: 26,336 out of 48,029

Extensive Copy Number Variation in Fermentation-Related Genes among Saccharomyces cerevisiae Wine Strains

evolutionary biology more details view paper
  • Downloaded 200 times
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    • Site-wide: 30,515 out of 48,029
    • In evolutionary biology: 2,492 out of 3,465
  • Year to date:
    • Site-wide: 43,773 out of 48,029
  • Since beginning of last month:
    • Site-wide: 44,194 out of 48,029

Conservation and Divergence in the Asexual Sporulation Gene Regulatory Network Across a Genus of Filamentous Fungi

microbiology more details view paper
  • Downloaded 148 times
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    • Site-wide: 35,643 out of 48,029
    • In microbiology: 2,390 out of 3,711
  • Year to date:
    • Site-wide: 32,535 out of 48,029
  • Since beginning of last month:
    • Site-wide: 25,535 out of 48,029

The Genomic Geography and Evolution of Clusters of Tandemly Duplicated Genes in the Human and Mammal Genomes

evolutionary biology more details view paper
  • Downloaded 116 times
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    • Site-wide: 39,125 out of 48,029
    • In evolutionary biology: 3,032 out of 3,465
  • Year to date:
    • Site-wide: 22,775 out of 48,029
  • Since beginning of last month:
    • Site-wide: 32,884 out of 48,029

The impact of natural selection on the evolution and function of placentally expressed galectins

evolutionary biology more details view paper
  • Downloaded 58 times
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    • Site-wide: 44,699 out of 48,029
    • In evolutionary biology: 3,318 out of 3,465
  • Year to date:
    • Site-wide: 32,402 out of 48,029
  • Since beginning of last month:
    • Site-wide: 23,081 out of 48,029

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