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Author: John Anthony Capra

Rankings

  • All-time downloads: 25,700 (rank: 8,688 (tie) )
  • Categories:
    • bioinformatics: 2,994 (rank: 5,609 (tie) )
    • cancer biology: 105 (rank: 41,965 (tie) )
    • developmental biology: 148 (rank: 22,641 (tie) )
    • evolutionary biology: 9,527 (rank: 246 )
    • genetics: 3,349 (rank: 6,223 )
    • genomics: 7,848 (rank: 3,124 (tie) )
    • health informatics: 577 (rank: 1,853 (tie) )
    • immunology: 1,152 (rank: 12,167 (tie) )

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Preprints

Topologically associating domain (TAD) boundaries stable across diverse cell types are evolutionarily constrained and enriched for heritability

genomics more details view paper
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Unravelling the genetic architecture of musical rhythm: a large-scale genome-wide association study of beat synchronization

genetics more details view paper
  • Downloaded 2,465 times
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    • Site-wide: 7,334
    • In genetics: 303
  • Year to date:
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Neanderthal introgression reintroduced functional ancestral alleles lost in Eurasian populations

evolutionary biology more details view paper
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    • Site-wide: 9,220
    • In evolutionary biology: 239
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Quantifying the contribution of Neanderthal introgression to the heritability of complex traits

evolutionary biology more details view paper
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    • Site-wide: 12,861
    • In evolutionary biology: 379
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Genome wide association analysis uncovers variants for reproductive variation across dog breeds and links to domestication

evolutionary biology more details view paper
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    • Site-wide: 16,184
    • In evolutionary biology: 520
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Functional annotation of rare structural variation in the human brain

genomics more details view paper
  • Downloaded 1,286 times
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    • Site-wide: 19,526
    • In genomics: 1,821
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Are Genetic Interactions Influencing Gene Expression Evidence for Biological Epistasis or Statistical Artifacts?

genomics more details view paper
  • Downloaded 1,267 times
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    • In genomics: 1,861
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Predicting changes in protein thermodynamic stability upon point mutation with deep 3D convolutional neural networks

bioinformatics more details view paper
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    • Site-wide: 20,131
    • In bioinformatics: 2,275
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Polygenic selection underlies evolution of human brain structure and behavioral traits

evolutionary biology more details view paper
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    • Site-wide: 22,553
    • In evolutionary biology: 844
  • Year to date:
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Which animals are at risk? Predicting species susceptibility to Covid-19

immunology more details view paper
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    • Site-wide: 23,045
    • In immunology: 801
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    • Site-wide: 19,956
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    • Site-wide: 34,925

Comprehensive Analysis of Constraint on the Spatial Distribution of Missense Variants in Human Protein Structures

genetics more details view paper
  • Downloaded 884 times
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    • Site-wide: 34,213
    • In genetics: 1,494
  • Year to date:
    • Site-wide: 149,316
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    • Site-wide: 155,179

Identifying digenic disease genes using machine learning in the undiagnosed diseases network

bioinformatics more details view paper
  • Downloaded 850 times
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    • Site-wide: 36,146
    • In bioinformatics: 3,896
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    • Site-wide: 20,401
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    • Site-wide: 26,581

Evaluating Human Autosomal Loci for Sexually Antagonistic Viability Selection in Two Large Biobanks

evolutionary biology more details view paper
  • Downloaded 834 times
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    • Site-wide: 37,228
    • In evolutionary biology: 1,644
  • Year to date:
    • Site-wide: 53,311
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    • Site-wide: 59,029

Short DNA sequence patterns accurately identify broadly active human enhancers

genomics more details view paper
  • Downloaded 765 times
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    • Site-wide: 42,148
    • In genomics: 3,345
  • Year to date:
    • Site-wide: 147,991
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Examination of signatures of recent positive selection on genes involved in human sialic acid biology

evolutionary biology more details view paper
  • Downloaded 744 times
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    • Site-wide: 43,878
    • In evolutionary biology: 2,019
  • Year to date:
    • Site-wide: 79,261
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    • Site-wide: 131,959

Genome-wide maps of distal gene regulatory regions active in the human placenta

genomics more details view paper
  • Downloaded 685 times
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    • Site-wide: 49,221
    • In genomics: 3,755
  • Year to date:
    • Site-wide: 151,290
  • Since beginning of last month:
    • Site-wide: 116,979

Dense phenotyping from electronic health records enables machine-learning-based prediction of preterm birth

health informatics more details view paper
  • Downloaded 577 times
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    • Site-wide: 61,637
    • In health informatics: 250
  • Year to date:
    • Site-wide: 36,468
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    • Site-wide: 29,789

Signatures of recent positive selection in enhancers across 41 human tissues

evolutionary biology more details view paper
  • Downloaded 488 times
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    • Site-wide: 75,173
    • In evolutionary biology: 3,776
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LEARNING AND INTERPRETING THE GENE REGULATORY GRAMMAR IN A DEEP LEARNING FRAMEWORK

bioinformatics more details view paper
  • Downloaded 458 times
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    • Site-wide: 80,610
    • In bioinformatics: 7,310
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Tracing the evolution of human gene regulation and its association with shifts in environment

genomics more details view paper
  • Downloaded 452 times
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    • Site-wide: 81,637
    • In genomics: 5,316
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Accounting for diverse evolutionary forces reveals the mosaic nature of selection on genomic regions associated with human preterm birth

evolutionary biology more details view paper
  • Downloaded 446 times
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    • Site-wide: 82,913
    • In evolutionary biology: 4,174
  • Year to date:
    • Site-wide: 120,154
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integRATE: a desirability-based data integration framework for the prioritization of candidate genes across heterogeneous omics and its application to preterm birth

genomics more details view paper
  • Downloaded 429 times
  • Download rankings, all-time:
    • Site-wide: 86,158
    • In genomics: 5,526
  • Year to date:
    • Site-wide: 161,626
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    • Site-wide: 144,536

Modeling the evolutionary architectures of human enhancer sequences reveals distinct origins, functions, and associations with human-trait variation

evolutionary biology more details view paper
  • Downloaded 402 times
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    • Site-wide: 91,900
    • In evolutionary biology: 4,604
  • Year to date:
    • Site-wide: 66,329
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    • Site-wide: 88,848

The 3D spatial constraint on 6.1 million amino acid sites in the human proteome

genomics more details view paper
  • Downloaded 392 times
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    • Site-wide: 94,034
    • In genomics: 5,848
  • Year to date:
    • Site-wide: 23,248
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A multi-task deep-learning system for predicting membrane associations and secondary structures of proteins

bioinformatics more details view paper
  • Downloaded 257 times
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    • Site-wide: 127,838
    • In bioinformatics: 10,222
  • Year to date:
    • Site-wide: 65,443
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    • Site-wide: 95,274

Diverse functions associate with trans-species polymorphisms in humans

evolutionary biology more details view paper
  • Downloaded 196 times
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    • Site-wide: 143,358
    • In evolutionary biology: 6,866
  • Year to date:
    • Site-wide: 59,647
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    • Site-wide: 111,342

An Association Test of the Spatial Distribution of Rare Missense Variants within Protein Structures Improves Statistical Power of Sequencing Studies

bioinformatics more details view paper
  • Downloaded 170 times
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    • Site-wide: 149,021
    • In bioinformatics: 11,396
  • Year to date:
    • Site-wide: 70,034
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    • Site-wide: 116,184

R-loop mapping and characterization during Drosophila embryogenesis reveals developmental plasticity in R-loop signatures

developmental biology more details view paper
  • Downloaded 148 times
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    • Site-wide: 153,375
    • In developmental biology: 4,047
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An active learning framework improves tumor variant interpretation

cancer biology more details view paper
  • Downloaded 105 times
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    • Site-wide: 159,613
    • In cancer biology: 4,905
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