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Author: Trevor Bedford

Rankings

  • All-time downloads: 49,331 (rank: 2,537 )
  • Categories:
    • bioinformatics: 304 (rank: 29,711 (tie) )
    • epidemiology: 22,537 (rank: 471 )
    • evolutionary biology: 8,404 (rank: 243 )
    • genomics: 5,752 (rank: 3,539 )
    • infectious diseases: 8,720 (rank: 4,213 )
    • microbiology: 3,614 (rank: 3,186 (tie) )

Downloads per author, site-wide

Preprints

Cryptic transmission of SARS-CoV-2 in Washington State

epidemiology more details view paper
  • Downloaded 9,056 times
  • Download rankings, all-time:
    • Site-wide: 789
    • In epidemiology: 106
  • Year to date:
    • Site-wide: 5,014
  • Since beginning of last month:
    • Site-wide: 5,508

A Genomic Survey of SARS-CoV-2 Reveals Multiple Introductions into Northern California without a Predominant Lineage

infectious diseases more details view paper
  • Downloaded 6,270 times
  • Download rankings, all-time:
    • Site-wide: 1,268
    • In infectious diseases: 327
  • Year to date:
    • Site-wide: 20,207
  • Since beginning of last month:
    • Site-wide: 16,125

Effects of weather-related social distancing on city-scale transmission of respiratory viruses

epidemiology more details view paper
  • Downloaded 5,819 times
  • Download rankings, all-time:
    • Site-wide: 1,404
    • In epidemiology: 165
  • Year to date:
    • Site-wide: 21,720
  • Since beginning of last month:
    • Site-wide: 17,961

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples

genomics more details view paper
  • Downloaded 4,632 times
  • Download rankings, all-time:
    • Site-wide: 1,928
    • In genomics: 217
  • Year to date:
    • Site-wide: 13,210
  • Since beginning of last month:
    • Site-wide: 31,367

MERS-CoV spillover at the camel-human interface

epidemiology more details view paper
  • Downloaded 1,747 times
  • Download rankings, all-time:
    • Site-wide: 7,991
    • In epidemiology: 585
  • Year to date:
    • Site-wide: 40,784
  • Since beginning of last month:
    • Site-wide: 55,848

Epidemiological and evolutionary analysis of the 2014 Ebola virus outbreak

evolutionary biology more details view paper
  • Downloaded 1,717 times
  • Download rankings, all-time:
    • Site-wide: 8,206
    • In evolutionary biology: 260
  • Year to date:
    • Site-wide: 116,398
  • Since beginning of last month:
    • Site-wide: 67,366

Multiple introductions of Zika virus into the United States revealed through genomic epidemiology

epidemiology more details view paper
  • Downloaded 1,664 times
  • Download rankings, all-time:
    • Site-wide: 8,640
    • In epidemiology: 619
  • Year to date:
    • Site-wide: 119,133
  • Since beginning of last month:
    • Site-wide: 120,647

Viral genome sequencing places White House COVID-19 outbreak into phylogenetic context

epidemiology more details view paper
  • Downloaded 1,448 times
  • Download rankings, all-time:
    • Site-wide: 10,602
    • In epidemiology: 721
  • Year to date:
    • Site-wide: 6,230
  • Since beginning of last month:
    • Site-wide: 3,976

Seasonal influenza circulation patterns and projections for 2016-2017

evolutionary biology more details view paper
  • Downloaded 1,433 times
  • Download rankings, all-time:
    • Site-wide: 10,790
    • In evolutionary biology: 378
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 119,283

The Seattle Flu Study: a multi-arm community-based prospective study protocol for assessing influenza prevalence, transmission, and genomic epidemiology

infectious diseases more details view paper
  • Downloaded 1,315 times
  • Download rankings, all-time:
    • Site-wide: 12,268
    • In infectious diseases: 1,201
  • Year to date:
    • Site-wide: 64,147
  • Since beginning of last month:
    • Site-wide: 39,463

Seattle Flu Study - Swab and Send: Study Protocol for At-Home Surveillance Methods to Estimate the Burden of Respiratory Pathogens on a City-Wide Scale

infectious diseases more details view paper
  • Downloaded 1,078 times
  • Download rankings, all-time:
    • Site-wide: 16,596
    • In infectious diseases: 1,387
  • Year to date:
    • Site-wide: 100,424
  • Since beginning of last month:
    • Site-wide: 70,572

Real-time analysis and visualization of pathogen sequence data

microbiology more details view paper
  • Downloaded 886 times
  • Download rankings, all-time:
    • Site-wide: 22,117
    • In microbiology: 1,255
  • Year to date:
    • Site-wide: 121,886
  • Since beginning of last month:
    • Site-wide: 92,800

Dengue antigenic relationships predict evolutionary dynamics

evolutionary biology more details view paper
  • Downloaded 886 times
  • Download rankings, all-time:
    • Site-wide: 22,124
    • In evolutionary biology: 1,034
  • Year to date:
    • Site-wide: 97,994
  • Since beginning of last month:
    • Site-wide: 16,460

Genetic characterization of the Zika virus epidemic in the US Virgin Islands

epidemiology more details view paper
  • Downloaded 759 times
  • Download rankings, all-time:
    • Site-wide: 27,469
    • In epidemiology: 1,402
  • Year to date:
    • Site-wide: 111,641
  • Since beginning of last month:
    • Site-wide: 118,204

High-resolution influenza mapping of a city reveals socioeconomic determinants of transmission within and between urban quarters

microbiology more details view paper
  • Downloaded 758 times
  • Download rankings, all-time:
    • Site-wide: 27,554
    • In microbiology: 1,618
  • Year to date:
    • Site-wide: 46,429
  • Since beginning of last month:
    • Site-wide: 67,796

Deep mutational scanning of hemagglutinin helps predict evolutionary fates of human H3N2 influenza variants

evolutionary biology more details view paper
  • Downloaded 733 times
  • Download rankings, all-time:
    • Site-wide: 28,862
    • In evolutionary biology: 1,461
  • Year to date:
    • Site-wide: 57,756
  • Since beginning of last month:
    • Site-wide: 42,377

Mapping person-to-person variation in viral mutations that escape polyclonal serum targeting influenza hemagglutinin

microbiology more details view paper
  • Downloaded 717 times
  • Download rankings, all-time:
    • Site-wide: 29,742
    • In microbiology: 1,768
  • Year to date:
    • Site-wide: 26,730
  • Since beginning of last month:
    • Site-wide: 104,704

Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington State

epidemiology more details view paper
  • Downloaded 669 times
  • Download rankings, all-time:
    • Site-wide: 32,674
    • In epidemiology: 1,574
  • Year to date:
    • Site-wide: 11,901
  • Since beginning of last month:
    • Site-wide: 7,049

The ability of single genes vs full genomes to resolve time and space in outbreak analysis

epidemiology more details view paper
  • Downloaded 649 times
  • Download rankings, all-time:
    • Site-wide: 34,009
    • In epidemiology: 1,619
  • Year to date:
    • Site-wide: 119,742
  • Since beginning of last month:
    • Site-wide: 116,222

Comprehensive mapping of avian influenza polymerase adaptation to the human host

microbiology more details view paper
  • Downloaded 635 times
  • Download rankings, all-time:
    • Site-wide: 34,961
    • In microbiology: 2,085
  • Year to date:
    • Site-wide: 64,293
  • Since beginning of last month:
    • Site-wide: 113,686

Genomic epidemiology supports multiple introductions and cryptic transmission of Zika virus in Colombia

genomics more details view paper
  • Downloaded 624 times
  • Download rankings, all-time:
    • Site-wide: 35,778
    • In genomics: 3,116
  • Year to date:
    • Site-wide: 83,874
  • Since beginning of last month:
    • Site-wide: 80,628

Nextstrain: real-time tracking of pathogen evolution

evolutionary biology more details view paper
  • Downloaded 520 times
  • Download rankings, all-time:
    • Site-wide: 44,914
    • In evolutionary biology: 2,495
  • Year to date:
    • Site-wide: 81,513
  • Since beginning of last month:
    • Site-wide: 85,934

Early Prediction of Antigenic Transitions for Influenza A H3N2

epidemiology more details view paper
  • Downloaded 510 times
  • Download rankings, all-time:
    • Site-wide: 45,919
    • In epidemiology: 2,032
  • Year to date:
    • Site-wide: 117,004
  • Since beginning of last month:
    • Site-wide: 121,954

Evolution and rapid spread of a reassortant A(H3N2) virus that predominated the 2017-2018 influenza season

genomics more details view paper
  • Downloaded 496 times
  • Download rankings, all-time:
    • Site-wide: 47,435
    • In genomics: 3,813
  • Year to date:
    • Site-wide: 55,802
  • Since beginning of last month:
    • Site-wide: 106,097

Seasonal influenza circulation patterns and projections for September 2019 to September 2020

evolutionary biology more details view paper
  • Downloaded 494 times
  • Download rankings, all-time:
    • Site-wide: 47,730
    • In evolutionary biology: 2,691
  • Year to date:
    • Site-wide: 102,860
  • Since beginning of last month:
    • Site-wide: 55,047

Limited predictability of amino acid substitutions in seasonal influenza viruses

evolutionary biology more details view paper
  • Downloaded 478 times
  • Download rankings, all-time:
    • Site-wide: 49,490
    • In evolutionary biology: 2,802
  • Year to date:
    • Site-wide: 29,255
  • Since beginning of last month:
    • Site-wide: 30,901

Quantifying within-host diversity of H5N1 influenza viruses in humans and poultry in Cambodia

microbiology more details view paper
  • Downloaded 471 times
  • Download rankings, all-time:
    • Site-wide: 50,395
    • In microbiology: 3,247
  • Year to date:
    • Site-wide: 64,275
  • Since beginning of last month:
    • Site-wide: 92,007

Seasonal influenza circulation patterns and projections for Feb 2018 to Feb 2019

evolutionary biology more details view paper
  • Downloaded 452 times
  • Download rankings, all-time:
    • Site-wide: 52,715
    • In evolutionary biology: 2,980
  • Year to date:
    • Site-wide: 104,319
  • Since beginning of last month:
    • Site-wide: 102,589

Modern-Day SIV viral diversity generated by extensive recombination and cross-species transmission

evolutionary biology more details view paper
  • Downloaded 439 times
  • Download rankings, all-time:
    • Site-wide: 54,379
    • In evolutionary biology: 3,075
  • Year to date:
    • Site-wide: 99,877
  • Since beginning of last month:
    • Site-wide: 101,064

Seasonal influenza circulation patterns and projections for Sep 2017 to Sep 2018

evolutionary biology more details view paper
  • Downloaded 366 times
  • Download rankings, all-time:
    • Site-wide: 65,024
    • In evolutionary biology: 3,694
  • Year to date:
    • Site-wide: 110,227
  • Since beginning of last month:
    • Site-wide: 116,634

dms-view: Interactive visualization tool for deep mutational scanning data

bioinformatics more details view paper
  • Downloaded 304 times
  • Download rankings, all-time:
    • Site-wide: 75,885
    • In bioinformatics: 7,078
  • Year to date:
    • Site-wide: 79,861
  • Since beginning of last month:
    • Site-wide: 33,986

Seasonal influenza circulation patterns and projections for 2017-2018

evolutionary biology more details view paper
  • Downloaded 288 times
  • Download rankings, all-time:
    • Site-wide: 79,016
    • In evolutionary biology: 4,436
  • Year to date:
    • Site-wide: 82,737
  • Since beginning of last month:
    • Site-wide: 119,677

Characterising the epidemic spread of Influenza A/H3N2 within a city through phylogenetics

evolutionary biology more details view paper
  • Downloaded 247 times
  • Download rankings, all-time:
    • Site-wide: 87,446
    • In evolutionary biology: 4,828
  • Year to date:
    • Site-wide: 73,790
  • Since beginning of last month:
    • Site-wide: 98,348

Operationalizing genomic epidemiology during the Nord-Kivu Ebola outbreak, Democratic Republic of the Congo.

epidemiology more details view paper
  • Downloaded 216 times
  • Download rankings, all-time:
    • Site-wide: 93,962
    • In epidemiology: 3,771
  • Year to date:
    • Site-wide: 35,491
  • Since beginning of last month:
    • Site-wide: 30,024

Evidence for adaptive evolution in the receptor-binding domain of seasonal coronaviruses OC43 and 229E

evolutionary biology more details view paper
  • Downloaded 176 times
  • Download rankings, all-time:
    • Site-wide: 102,317
    • In evolutionary biology: 5,499
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: None

Integrating genotypes and phenotypes improves long-term forecasts of seasonal influenza A/H3N2 evolution

evolutionary biology more details view paper
  • Downloaded 175 times
  • Download rankings, all-time:
    • Site-wide: 102,498
    • In evolutionary biology: 5,511
  • Year to date:
    • Site-wide: 101,080
  • Since beginning of last month:
    • Site-wide: 113,528

Helicobacter pylori diversification during chronic infection within a single host generates sub-populations with distinct phenotypes

microbiology more details view paper
  • Downloaded 109 times
  • Download rankings, all-time:
    • Site-wide: 114,628
    • In microbiology: 8,807
  • Year to date:
    • Site-wide: 58,511
  • Since beginning of last month:
    • Site-wide: 107,242

Repeated introductions and intensive community transmission fueled a mumps virus outbreak in Washington State

infectious diseases more details view paper
  • Downloaded 57 times
  • Download rankings, all-time:
    • Site-wide: 121,979
    • In infectious diseases: 3,881
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: None

Evaluating Specimen Quality and Results from a Community-Wide, Home-Based Respiratory Surveillance Study

microbiology more details view paper
  • Downloaded 38 times
  • Download rankings, all-time:
    • Site-wide: 123,093
    • In microbiology: 9,701
  • Year to date:
    • Site-wide: 63,556
  • Since beginning of last month:
    • Site-wide: 21,641

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