Author: Trevor Bedford
- ORCiD: http://orcid.org/0000-0002-4039-5794
- Most recently observed institution: Fred Hutchinson Cancer Research Center, Seattle, Washington
Rankings
- All-time downloads: 49,331 (rank: 2,537 )
- Categories:
- bioinformatics: 304 (rank: 29,711 (tie) )
- epidemiology: 22,537 (rank: 471 )
- evolutionary biology: 8,404 (rank: 243 )
- genomics: 5,752 (rank: 3,539 )
- infectious diseases: 8,720 (rank: 4,213 )
- microbiology: 3,614 (rank: 3,186 (tie) )
Downloads per author, site-wide
Preprints
Cryptic transmission of SARS-CoV-2 in Washington State
epidemiology more details view paper- Downloaded 9,056 times
- Download rankings, all-time:
- Site-wide: 789
- In epidemiology: 106
- Year to date:
- Site-wide: 5,014
- Since beginning of last month:
- Site-wide: 5,508
A Genomic Survey of SARS-CoV-2 Reveals Multiple Introductions into Northern California without a Predominant Lineage
infectious diseases more details view paper- Downloaded 6,270 times
- Download rankings, all-time:
- Site-wide: 1,268
- In infectious diseases: 327
- Year to date:
- Site-wide: 20,207
- Since beginning of last month:
- Site-wide: 16,125
Effects of weather-related social distancing on city-scale transmission of respiratory viruses
epidemiology more details view paper- Downloaded 5,819 times
- Download rankings, all-time:
- Site-wide: 1,404
- In epidemiology: 165
- Year to date:
- Site-wide: 21,720
- Since beginning of last month:
- Site-wide: 17,961
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples
genomics more details view paper- Downloaded 4,632 times
- Download rankings, all-time:
- Site-wide: 1,928
- In genomics: 217
- Year to date:
- Site-wide: 13,210
- Since beginning of last month:
- Site-wide: 31,367
MERS-CoV spillover at the camel-human interface
epidemiology more details view paper- Downloaded 1,747 times
- Download rankings, all-time:
- Site-wide: 7,991
- In epidemiology: 585
- Year to date:
- Site-wide: 40,784
- Since beginning of last month:
- Site-wide: 55,848
Epidemiological and evolutionary analysis of the 2014 Ebola virus outbreak
evolutionary biology more details view paper- Downloaded 1,717 times
- Download rankings, all-time:
- Site-wide: 8,206
- In evolutionary biology: 260
- Year to date:
- Site-wide: 116,398
- Since beginning of last month:
- Site-wide: 67,366
Multiple introductions of Zika virus into the United States revealed through genomic epidemiology
epidemiology more details view paper- Downloaded 1,664 times
- Download rankings, all-time:
- Site-wide: 8,640
- In epidemiology: 619
- Year to date:
- Site-wide: 119,133
- Since beginning of last month:
- Site-wide: 120,647
Viral genome sequencing places White House COVID-19 outbreak into phylogenetic context
epidemiology more details view paper- Downloaded 1,448 times
- Download rankings, all-time:
- Site-wide: 10,602
- In epidemiology: 721
- Year to date:
- Site-wide: 6,230
- Since beginning of last month:
- Site-wide: 3,976
Seasonal influenza circulation patterns and projections for 2016-2017
evolutionary biology more details view paper- Downloaded 1,433 times
- Download rankings, all-time:
- Site-wide: 10,790
- In evolutionary biology: 378
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: 119,283
The Seattle Flu Study: a multi-arm community-based prospective study protocol for assessing influenza prevalence, transmission, and genomic epidemiology
infectious diseases more details view paper- Downloaded 1,315 times
- Download rankings, all-time:
- Site-wide: 12,268
- In infectious diseases: 1,201
- Year to date:
- Site-wide: 64,147
- Since beginning of last month:
- Site-wide: 39,463
Seattle Flu Study - Swab and Send: Study Protocol for At-Home Surveillance Methods to Estimate the Burden of Respiratory Pathogens on a City-Wide Scale
infectious diseases more details view paper- Downloaded 1,078 times
- Download rankings, all-time:
- Site-wide: 16,596
- In infectious diseases: 1,387
- Year to date:
- Site-wide: 100,424
- Since beginning of last month:
- Site-wide: 70,572
Real-time analysis and visualization of pathogen sequence data
microbiology more details view paper- Downloaded 886 times
- Download rankings, all-time:
- Site-wide: 22,117
- In microbiology: 1,255
- Year to date:
- Site-wide: 121,886
- Since beginning of last month:
- Site-wide: 92,800
Dengue antigenic relationships predict evolutionary dynamics
evolutionary biology more details view paper- Downloaded 886 times
- Download rankings, all-time:
- Site-wide: 22,124
- In evolutionary biology: 1,034
- Year to date:
- Site-wide: 97,994
- Since beginning of last month:
- Site-wide: 16,460
Genetic characterization of the Zika virus epidemic in the US Virgin Islands
epidemiology more details view paper- Downloaded 759 times
- Download rankings, all-time:
- Site-wide: 27,469
- In epidemiology: 1,402
- Year to date:
- Site-wide: 111,641
- Since beginning of last month:
- Site-wide: 118,204
High-resolution influenza mapping of a city reveals socioeconomic determinants of transmission within and between urban quarters
microbiology more details view paper- Downloaded 758 times
- Download rankings, all-time:
- Site-wide: 27,554
- In microbiology: 1,618
- Year to date:
- Site-wide: 46,429
- Since beginning of last month:
- Site-wide: 67,796
Deep mutational scanning of hemagglutinin helps predict evolutionary fates of human H3N2 influenza variants
evolutionary biology more details view paper- Downloaded 733 times
- Download rankings, all-time:
- Site-wide: 28,862
- In evolutionary biology: 1,461
- Year to date:
- Site-wide: 57,756
- Since beginning of last month:
- Site-wide: 42,377
Mapping person-to-person variation in viral mutations that escape polyclonal serum targeting influenza hemagglutinin
microbiology more details view paper- Downloaded 717 times
- Download rankings, all-time:
- Site-wide: 29,742
- In microbiology: 1,768
- Year to date:
- Site-wide: 26,730
- Since beginning of last month:
- Site-wide: 104,704
Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington State
epidemiology more details view paper- Downloaded 669 times
- Download rankings, all-time:
- Site-wide: 32,674
- In epidemiology: 1,574
- Year to date:
- Site-wide: 11,901
- Since beginning of last month:
- Site-wide: 7,049
The ability of single genes vs full genomes to resolve time and space in outbreak analysis
epidemiology more details view paper- Downloaded 649 times
- Download rankings, all-time:
- Site-wide: 34,009
- In epidemiology: 1,619
- Year to date:
- Site-wide: 119,742
- Since beginning of last month:
- Site-wide: 116,222
Comprehensive mapping of avian influenza polymerase adaptation to the human host
microbiology more details view paper- Downloaded 635 times
- Download rankings, all-time:
- Site-wide: 34,961
- In microbiology: 2,085
- Year to date:
- Site-wide: 64,293
- Since beginning of last month:
- Site-wide: 113,686
Genomic epidemiology supports multiple introductions and cryptic transmission of Zika virus in Colombia
genomics more details view paper- Downloaded 624 times
- Download rankings, all-time:
- Site-wide: 35,778
- In genomics: 3,116
- Year to date:
- Site-wide: 83,874
- Since beginning of last month:
- Site-wide: 80,628
Nextstrain: real-time tracking of pathogen evolution
evolutionary biology more details view paper- Downloaded 520 times
- Download rankings, all-time:
- Site-wide: 44,914
- In evolutionary biology: 2,495
- Year to date:
- Site-wide: 81,513
- Since beginning of last month:
- Site-wide: 85,934
Early Prediction of Antigenic Transitions for Influenza A H3N2
epidemiology more details view paper- Downloaded 510 times
- Download rankings, all-time:
- Site-wide: 45,919
- In epidemiology: 2,032
- Year to date:
- Site-wide: 117,004
- Since beginning of last month:
- Site-wide: 121,954
Evolution and rapid spread of a reassortant A(H3N2) virus that predominated the 2017-2018 influenza season
genomics more details view paper- Downloaded 496 times
- Download rankings, all-time:
- Site-wide: 47,435
- In genomics: 3,813
- Year to date:
- Site-wide: 55,802
- Since beginning of last month:
- Site-wide: 106,097
Seasonal influenza circulation patterns and projections for September 2019 to September 2020
evolutionary biology more details view paper- Downloaded 494 times
- Download rankings, all-time:
- Site-wide: 47,730
- In evolutionary biology: 2,691
- Year to date:
- Site-wide: 102,860
- Since beginning of last month:
- Site-wide: 55,047
Limited predictability of amino acid substitutions in seasonal influenza viruses
evolutionary biology more details view paper- Downloaded 478 times
- Download rankings, all-time:
- Site-wide: 49,490
- In evolutionary biology: 2,802
- Year to date:
- Site-wide: 29,255
- Since beginning of last month:
- Site-wide: 30,901
Quantifying within-host diversity of H5N1 influenza viruses in humans and poultry in Cambodia
microbiology more details view paper- Downloaded 471 times
- Download rankings, all-time:
- Site-wide: 50,395
- In microbiology: 3,247
- Year to date:
- Site-wide: 64,275
- Since beginning of last month:
- Site-wide: 92,007
Seasonal influenza circulation patterns and projections for Feb 2018 to Feb 2019
evolutionary biology more details view paper- Downloaded 452 times
- Download rankings, all-time:
- Site-wide: 52,715
- In evolutionary biology: 2,980
- Year to date:
- Site-wide: 104,319
- Since beginning of last month:
- Site-wide: 102,589
Modern-Day SIV viral diversity generated by extensive recombination and cross-species transmission
evolutionary biology more details view paper- Downloaded 439 times
- Download rankings, all-time:
- Site-wide: 54,379
- In evolutionary biology: 3,075
- Year to date:
- Site-wide: 99,877
- Since beginning of last month:
- Site-wide: 101,064
Seasonal influenza circulation patterns and projections for Sep 2017 to Sep 2018
evolutionary biology more details view paper- Downloaded 366 times
- Download rankings, all-time:
- Site-wide: 65,024
- In evolutionary biology: 3,694
- Year to date:
- Site-wide: 110,227
- Since beginning of last month:
- Site-wide: 116,634
dms-view: Interactive visualization tool for deep mutational scanning data
bioinformatics more details view paper- Downloaded 304 times
- Download rankings, all-time:
- Site-wide: 75,885
- In bioinformatics: 7,078
- Year to date:
- Site-wide: 79,861
- Since beginning of last month:
- Site-wide: 33,986
Seasonal influenza circulation patterns and projections for 2017-2018
evolutionary biology more details view paper- Downloaded 288 times
- Download rankings, all-time:
- Site-wide: 79,016
- In evolutionary biology: 4,436
- Year to date:
- Site-wide: 82,737
- Since beginning of last month:
- Site-wide: 119,677
Characterising the epidemic spread of Influenza A/H3N2 within a city through phylogenetics
evolutionary biology more details view paper- Downloaded 247 times
- Download rankings, all-time:
- Site-wide: 87,446
- In evolutionary biology: 4,828
- Year to date:
- Site-wide: 73,790
- Since beginning of last month:
- Site-wide: 98,348
Operationalizing genomic epidemiology during the Nord-Kivu Ebola outbreak, Democratic Republic of the Congo.
epidemiology more details view paper- Downloaded 216 times
- Download rankings, all-time:
- Site-wide: 93,962
- In epidemiology: 3,771
- Year to date:
- Site-wide: 35,491
- Since beginning of last month:
- Site-wide: 30,024
Evidence for adaptive evolution in the receptor-binding domain of seasonal coronaviruses OC43 and 229E
evolutionary biology more details view paper- Downloaded 176 times
- Download rankings, all-time:
- Site-wide: 102,317
- In evolutionary biology: 5,499
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: None
Integrating genotypes and phenotypes improves long-term forecasts of seasonal influenza A/H3N2 evolution
evolutionary biology more details view paper- Downloaded 175 times
- Download rankings, all-time:
- Site-wide: 102,498
- In evolutionary biology: 5,511
- Year to date:
- Site-wide: 101,080
- Since beginning of last month:
- Site-wide: 113,528
Helicobacter pylori diversification during chronic infection within a single host generates sub-populations with distinct phenotypes
microbiology more details view paper- Downloaded 109 times
- Download rankings, all-time:
- Site-wide: 114,628
- In microbiology: 8,807
- Year to date:
- Site-wide: 58,511
- Since beginning of last month:
- Site-wide: 107,242
Repeated introductions and intensive community transmission fueled a mumps virus outbreak in Washington State
infectious diseases more details view paper- Downloaded 57 times
- Download rankings, all-time:
- Site-wide: 121,979
- In infectious diseases: 3,881
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: None
Evaluating Specimen Quality and Results from a Community-Wide, Home-Based Respiratory Surveillance Study
microbiology more details view paper- Downloaded 38 times
- Download rankings, all-time:
- Site-wide: 123,093
- In microbiology: 9,701
- Year to date:
- Site-wide: 63,556
- Since beginning of last month:
- Site-wide: 21,641
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