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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 73,536 bioRxiv papers from 320,029 authors.

Author: OG Pybus

Rankings

  • All-time downloads: 15,288 (rank: 2,623 out of 320,029)
  • Categories:
    • bioinformatics: 1,517 (rank: 5,922 (tie) out of 27,785)
    • epidemiology: 9,082 (rank: 9 out of 9,542)
    • evolutionary biology: 2,755 (rank: 765 (tie) out of 17,023)
    • genetics: 968 (rank: 11,634 (tie) out of 31,352)
    • genomics: 452 (rank: 24,558 (tie) out of 35,691)
    • immunology: 514 (rank: 5,073 (tie) out of 15,552)

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Preprints

Virus genomes reveal the factors that spread and sustained the West African Ebola epidemic.

epidemiology more details view paper
  • Downloaded 2,214 times
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    • In epidemiology: 22 out of 1,556
  • Year to date:
    • Site-wide: 7,293 out of 73,536
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    • Site-wide: 7,293 out of 73,536

Multiple introductions of Zika virus into the United States revealed through genomic epidemiology

epidemiology more details view paper
  • Downloaded 1,563 times
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    • Site-wide: 4,164 out of 73,536
    • In epidemiology: 39 out of 1,556
  • Year to date:
    • Site-wide: 30,844 out of 73,536
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    • Site-wide: 30,844 out of 73,536

Discovery of a persistent Zika virus lineage in Bahia, Brazil

epidemiology more details view paper
  • Downloaded 1,086 times
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    • In epidemiology: 78 out of 1,556
  • Year to date:
    • Site-wide: 4,508 out of 73,536
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    • Site-wide: 4,508 out of 73,536

A potent neutralizing epitope of limited variability in the head domain of haemagglutinin as a novel influenza vaccine target

epidemiology more details view paper
  • Downloaded 938 times
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    • In epidemiology: 97 out of 1,556
  • Year to date:
    • Site-wide: 4,667 out of 73,536
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    • Site-wide: 4,667 out of 73,536

Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak

epidemiology more details view paper
  • Downloaded 869 times
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    • In epidemiology: 107 out of 1,556
  • Year to date:
    • Site-wide: 31,381 out of 73,536
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    • Site-wide: 31,381 out of 73,536

A phylogenetic codon substitution model for antibody lineages

evolutionary biology more details view paper
  • Downloaded 839 times
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    • In evolutionary biology: 739 out of 4,750
  • Year to date:
    • Site-wide: 65,908 out of 73,536
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    • Site-wide: 65,908 out of 73,536

Epidemiology of the Zika virus outbreak in the Cabo Verde Islands, West Africa

epidemiology more details view paper
  • Downloaded 783 times
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    • In epidemiology: 138 out of 1,556
  • Year to date:
    • Site-wide: 43,720 out of 73,536
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    • Site-wide: 43,720 out of 73,536

Optimal Point Process Filtering and Estimation of the Coalescent Process

bioinformatics more details view paper
  • Downloaded 591 times
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    • Site-wide: 19,320 out of 73,536
    • In bioinformatics: 2,864 out of 7,162
  • Year to date:
    • Site-wide: 33,625 out of 73,536
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    • Site-wide: 33,625 out of 73,536

Emergence of the Zika virus Asian lineage in Angola

epidemiology more details view paper
  • Downloaded 587 times
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    • In epidemiology: 234 out of 1,556
  • Year to date:
    • Site-wide: 18,688 out of 73,536
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    • Site-wide: 18,688 out of 73,536

Coalescent inference using serially sampled, high-throughput sequencing data from intra-host HIV infection

genetics more details view paper
  • Downloaded 564 times
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    • In genetics: 1,354 out of 4,034
  • Year to date:
    • Site-wide: 66,170 out of 73,536
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    • Site-wide: 66,170 out of 73,536

Parallel Evolution in the Emergence of Highly Pathogenic Avian Influenza A Viruses

evolutionary biology more details view paper
  • Downloaded 561 times
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    • Site-wide: 20,699 out of 73,536
    • In evolutionary biology: 1,441 out of 4,750
  • Year to date:
    • Site-wide: 19,256 out of 73,536
  • Since beginning of last month:
    • Site-wide: 19,256 out of 73,536

Repertoire-wide phylogenetic models of B cell molecular evolution reveal evolutionary signatures of aging and vaccination

immunology more details view paper
  • Downloaded 514 times
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    • Site-wide: 23,190 out of 73,536
    • In immunology: 449 out of 1,917
  • Year to date:
    • Site-wide: 37,464 out of 73,536
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    • Site-wide: 37,464 out of 73,536

Optimal Point Process Filtering for Birth-Death Model Estimation

bioinformatics more details view paper
  • Downloaded 467 times
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    • Site-wide: 26,109 out of 73,536
    • In bioinformatics: 3,574 out of 7,162
  • Year to date:
    • Site-wide: 62,041 out of 73,536
  • Since beginning of last month:
    • Site-wide: 62,041 out of 73,536

The multifurcating skyline plot

bioinformatics more details view paper
  • Downloaded 459 times
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    • Site-wide: 26,632 out of 73,536
    • In bioinformatics: 3,623 out of 7,162
  • Year to date:
    • Site-wide: 50,324 out of 73,536
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    • Site-wide: 50,324 out of 73,536

Phylogeographic and phylodynamic approaches to epidemiological hypothesis testing

evolutionary biology more details view paper
  • Downloaded 393 times
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    • Site-wide: 31,777 out of 73,536
    • In evolutionary biology: 2,315 out of 4,750
  • Year to date:
    • Site-wide: 7,070 out of 73,536
  • Since beginning of last month:
    • Site-wide: 7,070 out of 73,536

Modelling the decay of hotspot motifs in broadly neutralizing antibody lineages

evolutionary biology more details view paper
  • Downloaded 392 times
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    • Site-wide: 31,832 out of 73,536
    • In evolutionary biology: 2,320 out of 4,750
  • Year to date:
    • Site-wide: 71,585 out of 73,536
  • Since beginning of last month:
    • Site-wide: 71,585 out of 73,536

Emergence and persistence of the Chikungunya virus East-Central-South-African genotype in Northeast Brazil

epidemiology more details view paper
  • Downloaded 370 times
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    • In epidemiology: 512 out of 1,556
  • Year to date:
    • Site-wide: 58,097 out of 73,536
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    • Site-wide: 58,097 out of 73,536

Early genomic detection of the Cosmopolitan Genotype of Dengue Virus 2 in Angola, 2018

epidemiology more details view paper
  • Downloaded 359 times
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    • In epidemiology: 538 out of 1,556
  • Year to date:
    • Site-wide: 40,217 out of 73,536
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    • Site-wide: 40,217 out of 73,536

Jointly inferring the dynamics of population size and sampling intensity from molecular sequences

genetics more details view paper
  • Downloaded 316 times
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    • Site-wide: 39,361 out of 73,536
    • In genetics: 2,394 out of 4,034
  • Year to date:
    • Site-wide: 14,383 out of 73,536
  • Since beginning of last month:
    • Site-wide: 14,383 out of 73,536

Reverse immunodynamics: a new method to identifying targets of protective immunity.

epidemiology more details view paper
  • Downloaded 313 times
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    • Site-wide: 39,599 out of 73,536
    • In epidemiology: 659 out of 1,556
  • Year to date:
    • Site-wide: 39,964 out of 73,536
  • Since beginning of last month:
    • Site-wide: 39,964 out of 73,536

Early identification of dengue virus lineage replacement in Brazil using portable genomic surveillance

genomics more details view paper
  • Downloaded 300 times
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    • In genomics: 3,634 out of 4,879
  • Year to date:
    • Site-wide: 28,247 out of 73,536
  • Since beginning of last month:
    • Site-wide: 28,247 out of 73,536

The evolutionary dynamics of Oropouche Virus (OROV) in South America

evolutionary biology more details view paper
  • Downloaded 289 times
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    • Site-wide: 42,442 out of 73,536
    • In evolutionary biology: 3,058 out of 4,750
  • Year to date:
    • Site-wide: 27,187 out of 73,536
  • Since beginning of last month:
    • Site-wide: 27,187 out of 73,536

High resolution evolutionary analysis of within-host hepatitis C virus infection

evolutionary biology more details view paper
  • Downloaded 281 times
  • Download rankings, all-time:
    • Site-wide: 43,452 out of 73,536
    • In evolutionary biology: 3,126 out of 4,750
  • Year to date:
    • Site-wide: 53,395 out of 73,536
  • Since beginning of last month:
    • Site-wide: 53,395 out of 73,536

Oropouche virus cases identified in Ecuador using an optimised rRT-PCR informed by metagenomic sequencing

genomics more details view paper
  • Downloaded 152 times
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    • Site-wide: 62,147 out of 73,536
    • In genomics: 4,522 out of 4,879
  • Year to date:
    • Site-wide: 30,536 out of 73,536
  • Since beginning of last month:
    • Site-wide: 30,536 out of 73,536

Are skyline plot-based demographic estimates overly dependent on smoothing prior assumptions?

genetics more details view paper
  • Downloaded 88 times
  • Download rankings, all-time:
    • Site-wide: 70,285 out of 73,536
    • In genetics: 3,898 out of 4,034
  • Year to date:
    • Site-wide: 6,319 out of 73,536
  • Since beginning of last month:
    • Site-wide: 6,319 out of 73,536

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