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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 62,933 bioRxiv papers from 279,142 authors.

Author: Katherine S Pollard

Rankings

  • All-time downloads: 37,487 (rank: 398 out of 279,142)
  • Categories:
    • bioinformatics: 7,915 (rank: 424 out of 24,417)
    • clinical trials: 1,228 (rank: 125 (tie) out of 1,031)
    • ecology: 1,413 (rank: 844 out of 11,015)
    • evolutionary biology: 6,739 (rank: 100 out of 15,252)
    • genomics: 9,632 (rank: 1,053 out of 31,956)
    • microbiology: 5,713 (rank: 115 out of 28,583)
    • molecular biology: 1,979 (rank: 658 (tie) out of 12,756)
    • neuroscience: 381 (rank: 23,867 (tie) out of 45,996)
    • systems biology: 2,487 (rank: 529 (tie) out of 8,483)

Downloads per author, site-wide

Preprints

A Chromatin Accessibility Atlas of the Developing Human Telencephalon

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Predicting 3D genome folding from DNA sequence

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Evolutionary dynamics of bacteria in the gut microbiome within and across hosts

evolutionary biology more details view paper
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    • Site-wide: 876 out of 62,933
    • In evolutionary biology: 26 out of 4,228
  • Year to date:
    • Site-wide: 3,203 out of 62,933
  • Since beginning of last month:
    • Site-wide: 5,673 out of 62,933

American Gut: an Open Platform for Citizen-Science Microbiome Research

microbiology more details view paper
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    • Site-wide: 1,105 out of 62,933
    • In microbiology: 21 out of 5,025
  • Year to date:
    • Site-wide: 6,072 out of 62,933
  • Since beginning of last month:
    • Site-wide: 8,965 out of 62,933

An integrated metagenomics pipeline for strain profiling reveals novel patterns of transmission and global biogeography of bacteria

genomics more details view paper
  • Downloaded 2,584 times
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    • Site-wide: 1,403 out of 62,933
    • In genomics: 324 out of 4,316
  • Year to date:
    • Site-wide: 24,748 out of 62,933
  • Since beginning of last month:
    • Site-wide: 23,240 out of 62,933

Transcription Factors Recognize DNA Shape Without Nucleotide Recognition

systems biology more details view paper
  • Downloaded 2,487 times
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    • Site-wide: 1,509 out of 62,933
    • In systems biology: 33 out of 1,783
  • Year to date:
    • Site-wide: 21,794 out of 62,933
  • Since beginning of last month:
    • Site-wide: 32,154 out of 62,933

Chromatin features constrain structural variation across evolutionary timescales

genomics more details view paper
  • Downloaded 2,463 times
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    • Site-wide: 1,541 out of 62,933
    • In genomics: 347 out of 4,316
  • Year to date:
    • Site-wide: 7,374 out of 62,933
  • Since beginning of last month:
    • Site-wide: 26,463 out of 62,933

Massively parallel dissection of human accelerated regions in human and chimpanzee neural progenitors

evolutionary biology more details view paper
  • Downloaded 2,033 times
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    • Site-wide: 2,174 out of 62,933
    • In evolutionary biology: 93 out of 4,228
  • Year to date:
    • Site-wide: 3,520 out of 62,933
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    • Site-wide: 5,796 out of 62,933

Principles of Meiotic Chromosome Assembly

molecular biology more details view paper
  • Downloaded 1,600 times
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    • Site-wide: 3,260 out of 62,933
    • In molecular biology: 94 out of 1,967
  • Year to date:
    • Site-wide: 2,034 out of 62,933
  • Since beginning of last month:
    • Site-wide: 7,279 out of 62,933

Average genome size estimation enables accurate quantification of gene family abundance and sheds light on the functional ecology of the human microbiome

bioinformatics more details view paper
  • Downloaded 1,565 times
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    • Site-wide: 3,381 out of 62,933
    • In bioinformatics: 681 out of 6,251
  • Year to date:
    • Site-wide: 53,946 out of 62,933
  • Since beginning of last month:
    • Site-wide: 56,252 out of 62,933

A high-resolution, chromosome-assigned Komodo dragon genome reveals adaptations in the cardiovascular, muscular, and chemosensory systems of monitor lizards

genomics more details view paper
  • Downloaded 1,338 times
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    • Site-wide: 4,393 out of 62,933
    • In genomics: 791 out of 4,316
  • Year to date:
    • Site-wide: 870 out of 62,933
  • Since beginning of last month:
    • Site-wide: 8,495 out of 62,933

Phylogeny-corrected identification of microbial gene families relevant to human gut colonization

bioinformatics more details view paper
  • Downloaded 1,331 times
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    • Site-wide: 4,427 out of 62,933
    • In bioinformatics: 873 out of 6,251
  • Year to date:
    • Site-wide: 17,266 out of 62,933
  • Since beginning of last month:
    • Site-wide: 20,936 out of 62,933

Proteobacteria drive significant functional variability in the human gut microbiome

bioinformatics more details view paper
  • Downloaded 1,236 times
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    • Site-wide: 4,991 out of 62,933
    • In bioinformatics: 972 out of 6,251
  • Year to date:
    • Site-wide: 47,575 out of 62,933
  • Since beginning of last month:
    • Site-wide: 47,586 out of 62,933

Topical Silver Diamine Fluoride For Dental Caries Arrest In Preschool Children: A Randomized Controlled Trial

clinical trials more details view paper
  • Downloaded 1,228 times
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    • Site-wide: 5,048 out of 62,933
    • In clinical trials: 11 out of 99
  • Year to date:
    • Site-wide: 14,871 out of 62,933
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    • Site-wide: 26,976 out of 62,933

Protein binding and methylation on looping chromatin accurately predict distal regulatory interactions

bioinformatics more details view paper
  • Downloaded 1,183 times
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    • Site-wide: 5,370 out of 62,933
    • In bioinformatics: 1,034 out of 6,251
  • Year to date:
    • Site-wide: 60,004 out of 62,933
  • Since beginning of last month:
    • Site-wide: 60,603 out of 62,933

Most regulatory interactions are not in linkage disequilibrium

genomics more details view paper
  • Downloaded 1,163 times
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    • Site-wide: 5,532 out of 62,933
    • In genomics: 935 out of 4,316
  • Year to date:
    • Site-wide: 11,134 out of 62,933
  • Since beginning of last month:
    • Site-wide: 17,596 out of 62,933

Genomic analyses for age at menarche identify 389 independent signals and indicate BMI-independent effects of puberty timing on cancer susceptibility

genomics more details view paper
  • Downloaded 1,098 times
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    • Site-wide: 6,105 out of 62,933
    • In genomics: 1,015 out of 4,316
  • Year to date:
    • Site-wide: 40,356 out of 62,933
  • Since beginning of last month:
    • Site-wide: 38,794 out of 62,933

A unified sequence catalogue of over 280,000 genomes obtained from the human gut microbiome

microbiology more details view paper
  • Downloaded 1,074 times
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    • Site-wide: 6,332 out of 62,933
    • In microbiology: 242 out of 5,025
  • Year to date:
    • Site-wide: 1,314 out of 62,933
  • Since beginning of last month:
    • Site-wide: 38 out of 62,933

Development of Inflammatory Bowel Disease is Linked to a Longitudinal Restructuring of the Gut Metagenome in Mice

microbiology more details view paper
  • Downloaded 1,060 times
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    • Site-wide: 6,463 out of 62,933
    • In microbiology: 252 out of 5,025
  • Year to date:
    • Site-wide: 42,350 out of 62,933
  • Since beginning of last month:
    • Site-wide: 44,671 out of 62,933

Climate change will lead to pronounced shifts in the diversity of soil microbial communities

ecology more details view paper
  • Downloaded 815 times
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    • Site-wide: 9,779 out of 62,933
    • In ecology: 228 out of 2,673
  • Year to date:
    • Site-wide: 20,382 out of 62,933
  • Since beginning of last month:
    • Site-wide: 25,613 out of 62,933

Coevolutionary analyses require phylogenetically deep alignments and better null models to accurately detect inter-protein contacts within and between species

evolutionary biology more details view paper
  • Downloaded 721 times
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    • Site-wide: 11,677 out of 62,933
    • In evolutionary biology: 822 out of 4,228
  • Year to date:
    • Site-wide: 53,779 out of 62,933
  • Since beginning of last month:
    • Site-wide: 47,753 out of 62,933

Automated and accurate estimation of gene family abundance from shotgun metagenomes

bioinformatics more details view paper
  • Downloaded 708 times
  • Download rankings, all-time:
    • Site-wide: 11,984 out of 62,933
    • In bioinformatics: 1,994 out of 6,251
  • Year to date:
    • Site-wide: 56,652 out of 62,933
  • Since beginning of last month:
    • Site-wide: 61,030 out of 62,933

A most wanted list of conserved protein families with no known domains

genomics more details view paper
  • Downloaded 694 times
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    • Site-wide: 12,380 out of 62,933
    • In genomics: 1,712 out of 4,316
  • Year to date:
    • Site-wide: 56,163 out of 62,933
  • Since beginning of last month:
    • Site-wide: 57,402 out of 62,933

Features of ChIP-seq data peak calling algorithms with good operating characteristics

bioinformatics more details view paper
  • Downloaded 694 times
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    • Site-wide: 12,379 out of 62,933
    • In bioinformatics: 2,043 out of 6,251
  • Year to date:
    • Site-wide: 60,361 out of 62,933
  • Since beginning of last month:
    • Site-wide: 54,403 out of 62,933

AlleleAnalyzer: a tool for personalized and allele-specific sgRNA design

bioinformatics more details view paper
  • Downloaded 550 times
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    • Site-wide: 17,012 out of 62,933
    • In bioinformatics: 2,603 out of 6,251
  • Year to date:
    • Site-wide: 23,668 out of 62,933
  • Since beginning of last month:
    • Site-wide: 22,451 out of 62,933

Evolution of mechanisms that control mating in Drosophila males

neuroscience more details view paper
  • Downloaded 381 times
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    • Site-wide: 26,156 out of 62,933
    • In neuroscience: 4,457 out of 11,208
  • Year to date:
    • Site-wide: 47,739 out of 62,933
  • Since beginning of last month:
    • Site-wide: 38,098 out of 62,933

Unique Transcription Factor Functions Regulate Epigenetic and Transcriptional Dynamics During Cardiac Reprogramming

molecular biology more details view paper
  • Downloaded 379 times
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    • Site-wide: 26,289 out of 62,933
    • In molecular biology: 748 out of 1,967
  • Year to date:
    • Site-wide: 7,751 out of 62,933
  • Since beginning of last month:
    • Site-wide: 12,387 out of 62,933

Bat Accelerated Regions Identify a Bat Forelimb Specific Enhancer in the HoxD Locus

evolutionary biology more details view paper
  • Downloaded 370 times
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    • Site-wide: 27,003 out of 62,933
    • In evolutionary biology: 2,053 out of 4,228
  • Year to date:
    • Site-wide: 55,501 out of 62,933
  • Since beginning of last month:
    • Site-wide: 47,671 out of 62,933

phylogenize: correcting for phylogeny reveals genes associated with microbial distributions

bioinformatics more details view paper
  • Downloaded 344 times
  • Download rankings, all-time:
    • Site-wide: 29,037 out of 62,933
    • In bioinformatics: 3,835 out of 6,251
  • Year to date:
    • Site-wide: 20,068 out of 62,933
  • Since beginning of last month:
    • Site-wide: 23,940 out of 62,933

The Epstein-Barr virus episome maneuvers between nuclear chromatin compartments during reactivation

microbiology more details view paper
  • Downloaded 333 times
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    • Site-wide: 29,979 out of 62,933
    • In microbiology: 1,840 out of 5,025
  • Year to date:
    • Site-wide: 39,218 out of 62,933
  • Since beginning of last month:
    • Site-wide: 51,606 out of 62,933

A computational framework for detecting signatures of accelerated somatic evolution in cancer genomes

bioinformatics more details view paper
  • Downloaded 304 times
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    • Site-wide: 32,594 out of 62,933
    • In bioinformatics: 4,134 out of 6,251
  • Year to date:
    • Site-wide: 58,509 out of 62,933
  • Since beginning of last month:
    • Site-wide: 54,096 out of 62,933

The geometry of the distance-decay of similarity in ecological communities

ecology more details view paper
  • Downloaded 302 times
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    • Site-wide: 32,793 out of 62,933
    • In ecology: 1,076 out of 2,673
  • Year to date:
    • Site-wide: 52,700 out of 62,933
  • Since beginning of last month:
    • Site-wide: 43,815 out of 62,933

Global ecotypes in the ubiquitous marine clade SAR86

ecology more details view paper
  • Downloaded 296 times
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    • Site-wide: 33,341 out of 62,933
    • In ecology: 1,107 out of 2,673
  • Year to date:
    • Site-wide: 11,604 out of 62,933
  • Since beginning of last month:
    • Site-wide: 12,955 out of 62,933

Integrating Host Response and Unbiased Microbe Detection for Lower Respiratory Tract Infection Diagnosis in Critically Ill Adults

genomics more details view paper
  • Downloaded 292 times
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    • Site-wide: 33,665 out of 62,933
    • In genomics: 3,160 out of 4,316
  • Year to date:
    • Site-wide: 42,042 out of 62,933
  • Since beginning of last month:
    • Site-wide: 56,260 out of 62,933

A Metagenomic Comparison of Tracheal Aspirate and Mini-Bronchial Alveolar Lavage for Assessment of Respiratory Microbiota

microbiology more details view paper
  • Downloaded 280 times
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    • Site-wide: 34,890 out of 62,933
    • In microbiology: 2,232 out of 5,025
  • Year to date:
    • Site-wide: 23,463 out of 62,933
  • Since beginning of last month:
    • Site-wide: 25,595 out of 62,933

Developmental loci harbor clusters of accelerated regions that evolved independently in ape lineages

evolutionary biology more details view paper
  • Downloaded 269 times
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    • Site-wide: 36,046 out of 62,933
    • In evolutionary biology: 2,711 out of 4,228
  • Year to date:
    • Site-wide: 54,170 out of 62,933
  • Since beginning of last month:
    • Site-wide: 59,873 out of 62,933

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