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Author: Katherine S. Pollard

Rankings

  • All-time downloads: 107,935 (rank: 1,752 )
  • Categories:
    • bioinformatics: 14,654 (rank: 578 )
    • clinical trials: 1,707 (rank: 314 (tie) )
    • developmental biology: 9,175 (rank: 94 )
    • ecology: 2,190 (rank: 1,850 )
    • evolutionary biology: 9,920 (rank: 264 )
    • gastroenterology: 351 (rank: 1,683 (tie) )
    • genetics: 863 (rank: 21,035 (tie) )
    • genomics: 26,742 (rank: 480 )
    • immunology: 986 (rank: 15,565 (tie) )
    • infectious diseases: 14,691 (rank: 5,051 (tie) )
    • microbiology: 12,996 (rank: 1,635 )
    • molecular biology: 6,337 (rank: 555 )
    • neuroscience: 2,510 (rank: 12,026 (tie) )
    • systems biology: 2,762 (rank: 1,839 (tie) )

Downloads per author, site-wide

Preprints

Direct detection of SARS-CoV-2 using CRISPR-Cas13a and a mobile phone

infectious diseases more details view paper
  • Downloaded 12,665 times
  • Download rankings, all-time:
    • Site-wide: 931
    • In infectious diseases: 307
  • Year to date:
    • Site-wide: 8,657
  • Since beginning of last month:
    • Site-wide: 7,371

Broad Host Range of SARS-CoV-2 Predicted by Comparative and Structural Analysis of ACE2 in Vertebrates

genomics more details view paper
  • Downloaded 10,228 times
  • Download rankings, all-time:
    • Site-wide: 1,227
    • In genomics: 75
  • Year to date:
    • Site-wide: 13,145
  • Since beginning of last month:
    • Site-wide: 9,498

Single cell epigenomic atlas of the developing human brain and organoids

developmental biology more details view paper
  • Downloaded 7,995 times
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    • Site-wide: 1,665
    • In developmental biology: 10
  • Year to date:
    • Site-wide: 16,363
  • Since beginning of last month:
    • Site-wide: 12,020

A unified sequence catalogue of over 280,000 genomes obtained from the human gut microbiome

microbiology more details view paper
  • Downloaded 3,970 times
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    • Site-wide: 4,237
    • In microbiology: 280
  • Year to date:
    • Site-wide: 36,166
  • Since beginning of last month:
    • Site-wide: 50,653

American Gut: an Open Platform for Citizen-Science Microbiome Research

microbiology more details view paper
  • Downloaded 3,929 times
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    • Site-wide: 4,287
    • In microbiology: 283
  • Year to date:
    • Site-wide: 70,461
  • Since beginning of last month:
    • Site-wide: 149,537

Evolutionary dynamics of bacteria in the gut microbiome within and across hosts

evolutionary biology more details view paper
  • Downloaded 3,928 times
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    • Site-wide: 4,289
    • In evolutionary biology: 64
  • Year to date:
    • Site-wide: 80,019
  • Since beginning of last month:
    • Site-wide: 98,418

Predicting 3D genome folding from DNA sequence

genomics more details view paper
  • Downloaded 3,905 times
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    • Site-wide: 4,321
    • In genomics: 401
  • Year to date:
    • Site-wide: 45,588
  • Since beginning of last month:
    • Site-wide: None

Massively parallel dissection of human accelerated regions in human and chimpanzee neural progenitors

evolutionary biology more details view paper
  • Downloaded 3,438 times
  • Download rankings, all-time:
    • Site-wide: 5,204
    • In evolutionary biology: 95
  • Year to date:
    • Site-wide: 16,526
  • Since beginning of last month:
    • Site-wide: 15,132

An integrated metagenomics pipeline for strain profiling reveals novel patterns of transmission and global biogeography of bacteria

genomics more details view paper
  • Downloaded 3,292 times
  • Download rankings, all-time:
    • Site-wide: 5,546
    • In genomics: 507
  • Year to date:
    • Site-wide: 43,799
  • Since beginning of last month:
    • Site-wide: 76,983

Transcription Factors Recognize DNA Shape Without Nucleotide Recognition

systems biology more details view paper
  • Downloaded 2,771 times
  • Download rankings, all-time:
    • Site-wide: 7,100
    • In systems biology: 100
  • Year to date:
    • Site-wide: 141,439
  • Since beginning of last month:
    • Site-wide: 102,687

Chromatin features constrain structural variation across evolutionary timescales

genomics more details view paper
  • Downloaded 2,673 times
  • Download rankings, all-time:
    • Site-wide: 7,487
    • In genomics: 690
  • Year to date:
    • Site-wide: 146,711
  • Since beginning of last month:
    • Site-wide: 135,037

Accelerated RNA detection using tandem CRISPR nucleases

infectious diseases more details view paper
  • Downloaded 2,333 times
  • Download rankings, all-time:
    • Site-wide: 9,165
    • In infectious diseases: 1,538
  • Year to date:
    • Site-wide: 11,026
  • Since beginning of last month:
    • Site-wide: 7,406

Principles of Meiotic Chromosome Assembly

molecular biology more details view paper
  • Downloaded 2,076 times
  • Download rankings, all-time:
    • Site-wide: 10,892
    • In molecular biology: 253
  • Year to date:
    • Site-wide: 112,929
  • Since beginning of last month:
    • Site-wide: 150,910

A high-resolution, chromosome-assigned Komodo dragon genome reveals adaptations in the cardiovascular, muscular, and chemosensory systems of monitor lizards

genomics more details view paper
  • Downloaded 2,028 times
  • Download rankings, all-time:
    • Site-wide: 11,282
    • In genomics: 1,065
  • Year to date:
    • Site-wide: 40,641
  • Since beginning of last month:
    • Site-wide: 47,442

Molecular basis of CTCF binding polarity in genome folding

molecular biology more details view paper
  • Downloaded 1,871 times
  • Download rankings, all-time:
    • Site-wide: 12,710
    • In molecular biology: 308
  • Year to date:
    • Site-wide: 151,748
  • Since beginning of last month:
    • Site-wide: 170,120

Average genome size estimation enables accurate quantification of gene family abundance and sheds light on the functional ecology of the human microbiome

bioinformatics more details view paper
  • Downloaded 1,786 times
  • Download rankings, all-time:
    • Site-wide: 13,570
    • In bioinformatics: 1,389
  • Year to date:
    • Site-wide: 160,688
  • Since beginning of last month:
    • Site-wide: 167,626

Topical Silver Diamine Fluoride For Dental Caries Arrest In Preschool Children: A Randomized Controlled Trial

clinical trials more details view paper
  • Downloaded 1,733 times
  • Download rankings, all-time:
    • Site-wide: 14,226
    • In clinical trials: 28
  • Year to date:
    • Site-wide: 85,607
  • Since beginning of last month:
    • Site-wide: 52,008

Phylogeny-corrected identification of microbial gene families relevant to human gut colonization

bioinformatics more details view paper
  • Downloaded 1,620 times
  • Download rankings, all-time:
    • Site-wide: 15,698
    • In bioinformatics: 1,618
  • Year to date:
    • Site-wide: 156,760
  • Since beginning of last month:
    • Site-wide: 134,828

Proteobacteria drive significant functional variability in the human gut microbiome

bioinformatics more details view paper
  • Downloaded 1,518 times
  • Download rankings, all-time:
    • Site-wide: 17,377
    • In bioinformatics: 1,837
  • Year to date:
    • Site-wide: 112,736
  • Since beginning of last month:
    • Site-wide: 98,725

Most regulatory interactions are not in linkage disequilibrium

genomics more details view paper
  • Downloaded 1,505 times
  • Download rankings, all-time:
    • Site-wide: 17,594
    • In genomics: 1,576
  • Year to date:
    • Site-wide: 127,857
  • Since beginning of last month:
    • Site-wide: 167,094

Longitudinal linked read sequencing reveals ecological and evolutionary responses of a human gut microbiome during antibiotic treatment

microbiology more details view paper
  • Downloaded 1,505 times
  • Download rankings, all-time:
    • Site-wide: 17,603
    • In microbiology: 992
  • Year to date:
    • Site-wide: 54,064
  • Since beginning of last month:
    • Site-wide: 136,270

A Chromatin Accessibility Atlas of the Developing Human Telencephalon

neuroscience more details view paper
  • Downloaded 1,419 times
  • Download rankings, all-time:
    • Site-wide: 19,237
    • In neuroscience: 2,139
  • Year to date:
    • Site-wide: 52,734
  • Since beginning of last month:
    • Site-wide: 143,356

Genomic analyses for age at menarche identify 389 independent signals and indicate BMI-independent effects of puberty timing on cancer susceptibility

genomics more details view paper
  • Downloaded 1,360 times
  • Download rankings, all-time:
    • Site-wide: 20,524
    • In genomics: 1,797
  • Year to date:
    • Site-wide: 92,637
  • Since beginning of last month:
    • Site-wide: 146,057

An atlas of lamina-associated chromatin across twelve human cell types revealsan intermediate chromatin subtype

developmental biology more details view paper
  • Downloaded 1,356 times
  • Download rankings, all-time:
    • Site-wide: 20,618
    • In developmental biology: 353
  • Year to date:
    • Site-wide: 11,392
  • Since beginning of last month:
    • Site-wide: 16,079

Protein binding and methylation on looping chromatin accurately predict distal regulatory interactions

bioinformatics more details view paper
  • Downloaded 1,344 times
  • Download rankings, all-time:
    • Site-wide: 20,891
    • In bioinformatics: 2,208
  • Year to date:
    • Site-wide: 155,658
  • Since beginning of last month:
    • Site-wide: 127,325

Development of Inflammatory Bowel Disease is Linked to a Longitudinal Restructuring of the Gut Metagenome in Mice

microbiology more details view paper
  • Downloaded 1,324 times
  • Download rankings, all-time:
    • Site-wide: 21,372
    • In microbiology: 1,190
  • Year to date:
    • Site-wide: 142,539
  • Since beginning of last month:
    • Site-wide: 113,238

A Transcriptional Switch Governing Fibroblast Plasticity Underlies Reversibility of Chronic Heart Disease

molecular biology more details view paper
  • Downloaded 1,317 times
  • Download rankings, all-time:
    • Site-wide: 21,552
    • In molecular biology: 550
  • Year to date:
    • Site-wide: 86,461
  • Since beginning of last month:
    • Site-wide: 67,715

Reconstructing the 3D genome organization of Neanderthals reveals that chromatin folding shaped phenotypic and sequence divergence

evolutionary biology more details view paper
  • Downloaded 1,216 times
  • Download rankings, all-time:
    • Site-wide: 24,445
    • In evolutionary biology: 1,683
  • Year to date:
    • Site-wide: 952
  • Since beginning of last month:
    • Site-wide: 4,249

Accurate and sensitive detection of microbial eukaryotes from whole metagenome shotgun sequencing

bioinformatics more details view paper
  • Downloaded 1,207 times
  • Download rankings, all-time:
    • Site-wide: 24,726
    • In bioinformatics: 2,667
  • Year to date:
    • Site-wide: 56,625
  • Since beginning of last month:
    • Site-wide: 64,278

CellWalker integrates single-cell and bulk data to resolve regulatory elements across cell types in complex tissues

bioinformatics more details view paper
  • Downloaded 1,191 times
  • Download rankings, all-time:
    • Site-wide: 25,241
    • In bioinformatics: 2,688
  • Year to date:
    • Site-wide: 103,843
  • Since beginning of last month:
    • Site-wide: None

Unique Transcription Factor Functions Regulate Epigenetic and Transcriptional Dynamics During Cardiac Reprogramming

molecular biology more details view paper
  • Downloaded 1,133 times
  • Download rankings, all-time:
    • Site-wide: 27,221
    • In molecular biology: 686
  • Year to date:
    • Site-wide: 95,490
  • Since beginning of last month:
    • Site-wide: 100,778

Climate change will lead to pronounced shifts in the diversity of soil microbial communities

ecology more details view paper
  • Downloaded 1,124 times
  • Download rankings, all-time:
    • Site-wide: 27,572
    • In ecology: 444
  • Year to date:
    • Site-wide: 134,480
  • Since beginning of last month:
    • Site-wide: 113,988

Ultra-rapid metagenotyping of the human gut microbiome

bioinformatics more details view paper
  • Downloaded 1,065 times
  • Download rankings, all-time:
    • Site-wide: 29,842
    • In bioinformatics: 3,205
  • Year to date:
    • Site-wide: 47,616
  • Since beginning of last month:
    • Site-wide: 76,041

A diet-dependent enzyme from the human gut microbiome promotes Th17 cell accumulation and colitis

immunology more details view paper
  • Downloaded 1,020 times
  • Download rankings, all-time:
    • Site-wide: 31,773
    • In immunology: 1,082
  • Year to date:
    • Site-wide: 40,784
  • Since beginning of last month:
    • Site-wide: 38,049

A conserved enzyme found in diverse human gut bacteria interferes with anticancer drug efficacy

microbiology more details view paper
  • Downloaded 946 times
  • Download rankings, all-time:
    • Site-wide: 35,527
    • In microbiology: 1,968
  • Year to date:
    • Site-wide: 97,592
  • Since beginning of last month:
    • Site-wide: None

Coevolutionary analyses require phylogenetically deep alignments and better null models to accurately detect inter-protein contacts within and between species

evolutionary biology more details view paper
  • Downloaded 918 times
  • Download rankings, all-time:
    • Site-wide: 37,175
    • In evolutionary biology: 1,454
  • Year to date:
    • Site-wide: 153,487
  • Since beginning of last month:
    • Site-wide: 168,174

Integration of Protein Interactome Networks with Congenital Heart Disease Variants Reveals Candidate Disease Genes

genetics more details view paper
  • Downloaded 916 times
  • Download rankings, all-time:
    • Site-wide: 37,283
    • In genetics: 1,623
  • Year to date:
    • Site-wide: 33,656
  • Since beginning of last month:
    • Site-wide: 84,270

Automated and accurate estimation of gene family abundance from shotgun metagenomes

bioinformatics more details view paper
  • Downloaded 871 times
  • Download rankings, all-time:
    • Site-wide: 40,039
    • In bioinformatics: 4,054
  • Year to date:
    • Site-wide: 140,934
  • Since beginning of last month:
    • Site-wide: 113,204

Features of ChIP-seq data peak calling algorithms with good operating characteristics

bioinformatics more details view paper
  • Downloaded 840 times
  • Download rankings, all-time:
    • Site-wide: 42,261
    • In bioinformatics: 4,253
  • Year to date:
    • Site-wide: 167,841
  • Since beginning of last month:
    • Site-wide: 127,268

A most wanted list of conserved protein families with no known domains

genomics more details view paper
  • Downloaded 836 times
  • Download rankings, all-time:
    • Site-wide: 42,570
    • In genomics: 3,249
  • Year to date:
    • Site-wide: 143,854
  • Since beginning of last month:
    • Site-wide: 127,957

AlleleAnalyzer: a tool for personalized and allele-specific sgRNA design

bioinformatics more details view paper
  • Downloaded 809 times
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    • Site-wide: 44,670
    • In bioinformatics: 4,410
  • Year to date:
    • Site-wide: 168,027
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    • Site-wide: 164,559

Genome-wide variability in recombination activity is associated with meiotic chromatin organization

genomics more details view paper
  • Downloaded 705 times
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    • Site-wide: 54,362
    • In genomics: 3,959
  • Year to date:
    • Site-wide: 76,063
  • Since beginning of last month:
    • Site-wide: 139,421

A Metagenomic Comparison of Tracheal Aspirate and Mini-Bronchial Alveolar Lavage for Assessment of Respiratory Microbiota

microbiology more details view paper
  • Downloaded 657 times
  • Download rankings, all-time:
    • Site-wide: 59,854
    • In microbiology: 3,495
  • Year to date:
    • Site-wide: 167,996
  • Since beginning of last month:
    • Site-wide: 159,370

phylogenize: correcting for phylogeny reveals genes associated with microbial distributions

bioinformatics more details view paper
  • Downloaded 628 times
  • Download rankings, all-time:
    • Site-wide: 63,474
    • In bioinformatics: 5,883
  • Year to date:
    • Site-wide: 156,672
  • Since beginning of last month:
    • Site-wide: 177,754

Autism risk gene POGZ promotes chromatin accessibility and expression of clustered synaptic genes

neuroscience more details view paper
  • Downloaded 615 times
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    • Site-wide: 65,295
    • In neuroscience: 9,719
  • Year to date:
    • Site-wide: 46,784
  • Since beginning of last month:
    • Site-wide: 90,370

Cell Layers: Uncovering clustering structure and knowledge in unsupervised single-cell transcriptomic analysis

bioinformatics more details view paper
  • Downloaded 599 times
  • Download rankings, all-time:
    • Site-wide: 67,386
    • In bioinformatics: 6,396
  • Year to date:
    • Site-wide: 68,253
  • Since beginning of last month:
    • Site-wide: 92,818

The Epstein-Barr virus episome maneuvers between nuclear chromatin compartments during reactivation

microbiology more details view paper
  • Downloaded 577 times
  • Download rankings, all-time:
    • Site-wide: 70,641
    • In microbiology: 4,279
  • Year to date:
    • Site-wide: 153,858
  • Since beginning of last month:
    • Site-wide: 113,235

Global ecotypes in the ubiquitous marine clade SAR86

ecology more details view paper
  • Downloaded 564 times
  • Download rankings, all-time:
    • Site-wide: 72,689
    • In ecology: 1,694
  • Year to date:
    • Site-wide: 167,166
  • Since beginning of last month:
    • Site-wide: 147,093

Evolution of mechanisms that control mating in Drosophila males

neuroscience more details view paper
  • Downloaded 543 times
  • Download rankings, all-time:
    • Site-wide: 76,113
    • In neuroscience: 10,507
  • Year to date:
    • Site-wide: 170,368
  • Since beginning of last month:
    • Site-wide: 158,474

The geometry of the distance-decay of similarity in ecological communities

ecology more details view paper
  • Downloaded 530 times
  • Download rankings, all-time:
    • Site-wide: 78,450
    • In ecology: 1,910
  • Year to date:
    • Site-wide: 116,780
  • Since beginning of last month:
    • Site-wide: 99,465

Integrating Host Response and Unbiased Microbe Detection for Lower Respiratory Tract Infection Diagnosis in Critically Ill Adults

genomics more details view paper
  • Downloaded 513 times
  • Download rankings, all-time:
    • Site-wide: 81,323
    • In genomics: 5,207
  • Year to date:
    • Site-wide: 118,465
  • Since beginning of last month:
    • Site-wide: 135,261

Bat Accelerated Regions Identify a Bat Forelimb Specific Enhancer in the HoxD Locus

evolutionary biology more details view paper
  • Downloaded 509 times
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    • Site-wide: 82,196
    • In evolutionary biology: 3,858
  • Year to date:
    • Site-wide: 161,742
  • Since beginning of last month:
    • Site-wide: 114,557

A computational framework for detecting signatures of accelerated somatic evolution in cancer genomes

bioinformatics more details view paper
  • Downloaded 496 times
  • Download rankings, all-time:
    • Site-wide: 84,543
    • In bioinformatics: 7,414
  • Year to date:
    • Site-wide: 129,278
  • Since beginning of last month:
    • Site-wide: 134,611

CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements

bioinformatics more details view paper
  • Downloaded 460 times
  • Download rankings, all-time:
    • Site-wide: 92,016
    • In bioinformatics: 7,982
  • Year to date:
    • Site-wide: 66,406
  • Since beginning of last month:
    • Site-wide: 73,392

Developmental loci harbor clusters of accelerated regions that evolved independently in ape lineages

evolutionary biology more details view paper
  • Downloaded 408 times
  • Download rankings, all-time:
    • Site-wide: 103,862
    • In evolutionary biology: 4,826
  • Year to date:
    • Site-wide: 169,884
  • Since beginning of last month:
    • Site-wide: 177,480

Scalable microbial strain inference in metagenomic data using StrainFacts

bioinformatics more details view paper
  • Downloaded 407 times
  • Download rankings, all-time:
    • Site-wide: 104,120
    • In bioinformatics: 8,249
  • Year to date:
    • Site-wide: 4,915
  • Since beginning of last month:
    • Site-wide: 6,493

Strain-resolved analysis in a randomized trial of antibiotic pretreatment and maintenance dose delivery mode with fecal microbiota transplant for ulcerative colitis

gastroenterology more details view paper
  • Downloaded 402 times
  • Download rankings, all-time:
    • Site-wide: 105,313
    • In gastroenterology: 149
  • Year to date:
    • Site-wide: 22,456
  • Since beginning of last month:
    • Site-wide: 39,102

Single cell genome sequencing of laboratory mouse microbiota improves taxonomic and functional resolution of this model microbial community

microbiology more details view paper
  • Downloaded 185 times
  • Download rankings, all-time:
    • Site-wide: 165,170
    • In microbiology: 12,061
  • Year to date:
    • Site-wide: 34,253
  • Since beginning of last month:
    • Site-wide: 141,293

An oligogenic inheritance test detects risk genes and their interactions in congenital heart defects and developmental comorbidities

genetics more details view paper
  • Downloaded 156 times
  • Download rankings, all-time:
    • Site-wide: 172,127
    • In genetics: None
  • Year to date:
    • Site-wide: 19,123
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    • Site-wide: 3,174

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