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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 67,039 bioRxiv papers from 295,099 authors.

Author: Katherine S Pollard

Rankings

  • All-time downloads: 41,455 (rank: 374 out of 295,108)
  • Categories:
    • bioinformatics: 8,344 (rank: 415 out of 25,697)
    • clinical trials: 1,258 (rank: 136 (tie) out of 1,031)
    • ecology: 1,478 (rank: 855 (tie) out of 11,709)
    • evolutionary biology: 6,912 (rank: 112 out of 16,094)
    • genomics: 11,510 (rank: 882 out of 33,600)
    • microbiology: 6,641 (rank: 101 out of 30,477)
    • molecular biology: 2,085 (rank: 647 out of 14,183)
    • neuroscience: 723 (rank: 14,903 (tie) out of 49,444)
    • systems biology: 2,504 (rank: 565 (tie) out of 8,899)

Downloads per author, site-wide

Preprints

Evolutionary dynamics of bacteria in the gut microbiome within and across hosts

evolutionary biology more details view paper
  • Downloaded 3,387 times
  • Download rankings, all-time:
    • Site-wide: 935 out of 67,042
    • In evolutionary biology: 30 out of 4,461
  • Year to date:
    • Site-wide: 3,728 out of 67,042
  • Since beginning of last month:
    • Site-wide: 14,723 out of 67,042

American Gut: an Open Platform for Citizen-Science Microbiome Research

microbiology more details view paper
  • Downloaded 3,030 times
  • Download rankings, all-time:
    • Site-wide: 1,155 out of 67,042
    • In microbiology: 23 out of 5,408
  • Year to date:
    • Site-wide: 6,233 out of 67,042
  • Since beginning of last month:
    • Site-wide: 9,000 out of 67,042

An integrated metagenomics pipeline for strain profiling reveals novel patterns of transmission and global biogeography of bacteria

genomics more details view paper
  • Downloaded 2,603 times
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    • Site-wide: 1,504 out of 67,042
    • In genomics: 338 out of 4,558
  • Year to date:
    • Site-wide: 27,115 out of 67,042
  • Since beginning of last month:
    • Site-wide: 41,466 out of 67,042

Transcription Factors Recognize DNA Shape Without Nucleotide Recognition

systems biology more details view paper
  • Downloaded 2,504 times
  • Download rankings, all-time:
    • Site-wide: 1,617 out of 67,042
    • In systems biology: 36 out of 1,863
  • Year to date:
    • Site-wide: 24,309 out of 67,042
  • Since beginning of last month:
    • Site-wide: 53,495 out of 67,042

Chromatin features constrain structural variation across evolutionary timescales

genomics more details view paper
  • Downloaded 2,477 times
  • Download rankings, all-time:
    • Site-wide: 1,652 out of 67,042
    • In genomics: 365 out of 4,558
  • Year to date:
    • Site-wide: 8,987 out of 67,042
  • Since beginning of last month:
    • Site-wide: 43,752 out of 67,042

Massively parallel dissection of human accelerated regions in human and chimpanzee neural progenitors

evolutionary biology more details view paper
  • Downloaded 2,134 times
  • Download rankings, all-time:
    • Site-wide: 2,168 out of 67,042
    • In evolutionary biology: 93 out of 4,461
  • Year to date:
    • Site-wide: 3,505 out of 67,042
  • Since beginning of last month:
    • Site-wide: 6,999 out of 67,042

Predicting 3D genome folding from DNA sequence

genomics more details view paper
  • Downloaded 1,740 times
  • Download rankings, all-time:
    • Site-wide: 3,064 out of 67,042
    • In genomics: 602 out of 4,558
  • Year to date:
    • Site-wide: 690 out of 67,042
  • Since beginning of last month:
    • Site-wide: 306 out of 67,042

A unified sequence catalogue of over 280,000 genomes obtained from the human gut microbiome

microbiology more details view paper
  • Downloaded 1,681 times
  • Download rankings, all-time:
    • Site-wide: 3,247 out of 67,042
    • In microbiology: 93 out of 5,408
  • Year to date:
    • Site-wide: 747 out of 67,042
  • Since beginning of last month:
    • Site-wide: 438 out of 67,042

Principles of Meiotic Chromosome Assembly

molecular biology more details view paper
  • Downloaded 1,655 times
  • Download rankings, all-time:
    • Site-wide: 3,328 out of 67,042
    • In molecular biology: 97 out of 2,139
  • Year to date:
    • Site-wide: 2,366 out of 67,042
  • Since beginning of last month:
    • Site-wide: 20,444 out of 67,042

Average genome size estimation enables accurate quantification of gene family abundance and sheds light on the functional ecology of the human microbiome

bioinformatics more details view paper
  • Downloaded 1,569 times
  • Download rankings, all-time:
    • Site-wide: 3,636 out of 67,042
    • In bioinformatics: 731 out of 6,613
  • Year to date:
    • Site-wide: 60,251 out of 67,042
  • Since beginning of last month:
    • Site-wide: 64,930 out of 67,042

A high-resolution, chromosome-assigned Komodo dragon genome reveals adaptations in the cardiovascular, muscular, and chemosensory systems of monitor lizards

genomics more details view paper
  • Downloaded 1,392 times
  • Download rankings, all-time:
    • Site-wide: 4,474 out of 67,042
    • In genomics: 803 out of 4,558
  • Year to date:
    • Site-wide: 1,060 out of 67,042
  • Since beginning of last month:
    • Site-wide: 11,811 out of 67,042

Phylogeny-corrected identification of microbial gene families relevant to human gut colonization

bioinformatics more details view paper
  • Downloaded 1,351 times
  • Download rankings, all-time:
    • Site-wide: 4,692 out of 67,042
    • In bioinformatics: 912 out of 6,613
  • Year to date:
    • Site-wide: 19,294 out of 67,042
  • Since beginning of last month:
    • Site-wide: 33,584 out of 67,042

Topical Silver Diamine Fluoride For Dental Caries Arrest In Preschool Children: A Randomized Controlled Trial

clinical trials more details view paper
  • Downloaded 1,258 times
  • Download rankings, all-time:
    • Site-wide: 5,271 out of 67,042
    • In clinical trials: 12 out of 99
  • Year to date:
    • Site-wide: 15,957 out of 67,042
  • Since beginning of last month:
    • Site-wide: 30,518 out of 67,042

Proteobacteria drive significant functional variability in the human gut microbiome

bioinformatics more details view paper
  • Downloaded 1,247 times
  • Download rankings, all-time:
    • Site-wide: 5,347 out of 67,042
    • In bioinformatics: 1,024 out of 6,613
  • Year to date:
    • Site-wide: 51,609 out of 67,042
  • Since beginning of last month:
    • Site-wide: 52,999 out of 67,042

Protein binding and methylation on looping chromatin accurately predict distal regulatory interactions

bioinformatics more details view paper
  • Downloaded 1,194 times
  • Download rankings, all-time:
    • Site-wide: 5,744 out of 67,042
    • In bioinformatics: 1,093 out of 6,613
  • Year to date:
    • Site-wide: 63,526 out of 67,042
  • Since beginning of last month:
    • Site-wide: 40,744 out of 67,042

Most regulatory interactions are not in linkage disequilibrium

genomics more details view paper
  • Downloaded 1,187 times
  • Download rankings, all-time:
    • Site-wide: 5,803 out of 67,042
    • In genomics: 980 out of 4,558
  • Year to date:
    • Site-wide: 12,666 out of 67,042
  • Since beginning of last month:
    • Site-wide: 29,363 out of 67,042

Genomic analyses for age at menarche identify 389 independent signals and indicate BMI-independent effects of puberty timing on cancer susceptibility

genomics more details view paper
  • Downloaded 1,109 times
  • Download rankings, all-time:
    • Site-wide: 6,531 out of 67,042
    • In genomics: 1,072 out of 4,558
  • Year to date:
    • Site-wide: 44,630 out of 67,042
  • Since beginning of last month:
    • Site-wide: 63,622 out of 67,042

Development of Inflammatory Bowel Disease is Linked to a Longitudinal Restructuring of the Gut Metagenome in Mice

microbiology more details view paper
  • Downloaded 1,076 times
  • Download rankings, all-time:
    • Site-wide: 6,857 out of 67,042
    • In microbiology: 268 out of 5,408
  • Year to date:
    • Site-wide: 44,956 out of 67,042
  • Since beginning of last month:
    • Site-wide: 37,013 out of 67,042

Climate change will lead to pronounced shifts in the diversity of soil microbial communities

ecology more details view paper
  • Downloaded 836 times
  • Download rankings, all-time:
    • Site-wide: 10,209 out of 67,042
    • In ecology: 244 out of 2,862
  • Year to date:
    • Site-wide: 22,417 out of 67,042
  • Since beginning of last month:
    • Site-wide: 38,326 out of 67,042

Coevolutionary analyses require phylogenetically deep alignments and better null models to accurately detect inter-protein contacts within and between species

evolutionary biology more details view paper
  • Downloaded 731 times
  • Download rankings, all-time:
    • Site-wide: 12,495 out of 67,042
    • In evolutionary biology: 857 out of 4,461
  • Year to date:
    • Site-wide: 57,716 out of 67,042
  • Since beginning of last month:
    • Site-wide: 50,936 out of 67,042

Automated and accurate estimation of gene family abundance from shotgun metagenomes

bioinformatics more details view paper
  • Downloaded 716 times
  • Download rankings, all-time:
    • Site-wide: 12,873 out of 67,042
    • In bioinformatics: 2,102 out of 6,613
  • Year to date:
    • Site-wide: 61,160 out of 67,042
  • Since beginning of last month:
    • Site-wide: 53,663 out of 67,042

Features of ChIP-seq data peak calling algorithms with good operating characteristics

bioinformatics more details view paper
  • Downloaded 701 times
  • Download rankings, all-time:
    • Site-wide: 13,269 out of 67,042
    • In bioinformatics: 2,160 out of 6,613
  • Year to date:
    • Site-wide: 64,839 out of 67,042
  • Since beginning of last month:
    • Site-wide: 54,197 out of 67,042

A most wanted list of conserved protein families with no known domains

genomics more details view paper
  • Downloaded 698 times
  • Download rankings, all-time:
    • Site-wide: 13,349 out of 67,042
    • In genomics: 1,815 out of 4,558
  • Year to date:
    • Site-wide: 62,014 out of 67,042
  • Since beginning of last month:
    • Site-wide: 62,274 out of 67,042

AlleleAnalyzer: a tool for personalized and allele-specific sgRNA design

bioinformatics more details view paper
  • Downloaded 591 times
  • Download rankings, all-time:
    • Site-wide: 16,825 out of 67,042
    • In bioinformatics: 2,589 out of 6,613
  • Year to date:
    • Site-wide: 22,824 out of 67,042
  • Since beginning of last month:
    • Site-wide: 12,732 out of 67,042

Unique Transcription Factor Functions Regulate Epigenetic and Transcriptional Dynamics During Cardiac Reprogramming

molecular biology more details view paper
  • Downloaded 430 times
  • Download rankings, all-time:
    • Site-wide: 25,031 out of 67,042
    • In molecular biology: 724 out of 2,139
  • Year to date:
    • Site-wide: 8,131 out of 67,042
  • Since beginning of last month:
    • Site-wide: 13,826 out of 67,042

Evolution of mechanisms that control mating in Drosophila males

neuroscience more details view paper
  • Downloaded 391 times
  • Download rankings, all-time:
    • Site-wide: 27,766 out of 67,042
    • In neuroscience: 4,779 out of 12,017
  • Year to date:
    • Site-wide: 52,379 out of 67,042
  • Since beginning of last month:
    • Site-wide: 38,417 out of 67,042

Bat Accelerated Regions Identify a Bat Forelimb Specific Enhancer in the HoxD Locus

evolutionary biology more details view paper
  • Downloaded 377 times
  • Download rankings, all-time:
    • Site-wide: 28,908 out of 67,042
    • In evolutionary biology: 2,165 out of 4,461
  • Year to date:
    • Site-wide: 60,392 out of 67,042
  • Since beginning of last month:
    • Site-wide: 60,204 out of 67,042

phylogenize: correcting for phylogeny reveals genes associated with microbial distributions

bioinformatics more details view paper
  • Downloaded 368 times
  • Download rankings, all-time:
    • Site-wide: 29,685 out of 67,042
    • In bioinformatics: 3,905 out of 6,613
  • Year to date:
    • Site-wide: 21,695 out of 67,042
  • Since beginning of last month:
    • Site-wide: 32,960 out of 67,042

The Epstein-Barr virus episome maneuvers between nuclear chromatin compartments during reactivation

microbiology more details view paper
  • Downloaded 353 times
  • Download rankings, all-time:
    • Site-wide: 30,953 out of 67,042
    • In microbiology: 1,886 out of 5,408
  • Year to date:
    • Site-wide: 40,914 out of 67,042
  • Since beginning of last month:
    • Site-wide: 24,894 out of 67,042

A Chromatin Accessibility Atlas of the Developing Human Telencephalon

neuroscience more details view paper
  • Downloaded 332 times
  • Download rankings, all-time:
    • Site-wide: 32,848 out of 67,042
    • In neuroscience: 5,697 out of 12,017
  • Year to date:
    • Site-wide: 12,424 out of 67,042
  • Since beginning of last month:
    • Site-wide: 1,365 out of 67,042

Global ecotypes in the ubiquitous marine clade SAR86

ecology more details view paper
  • Downloaded 331 times
  • Download rankings, all-time:
    • Site-wide: 32,950 out of 67,042
    • In ecology: 1,045 out of 2,862
  • Year to date:
    • Site-wide: 12,486 out of 67,042
  • Since beginning of last month:
    • Site-wide: 24,191 out of 67,042

A computational framework for detecting signatures of accelerated somatic evolution in cancer genomes

bioinformatics more details view paper
  • Downloaded 328 times
  • Download rankings, all-time:
    • Site-wide: 33,244 out of 67,042
    • In bioinformatics: 4,187 out of 6,613
  • Year to date:
    • Site-wide: 57,879 out of 67,042
  • Since beginning of last month:
    • Site-wide: 17,952 out of 67,042

A Metagenomic Comparison of Tracheal Aspirate and Mini-Bronchial Alveolar Lavage for Assessment of Respiratory Microbiota

microbiology more details view paper
  • Downloaded 314 times
  • Download rankings, all-time:
    • Site-wide: 34,609 out of 67,042
    • In microbiology: 2,204 out of 5,408
  • Year to date:
    • Site-wide: 23,594 out of 67,042
  • Since beginning of last month:
    • Site-wide: 17,493 out of 67,042

The geometry of the distance-decay of similarity in ecological communities

ecology more details view paper
  • Downloaded 311 times
  • Download rankings, all-time:
    • Site-wide: 34,904 out of 67,042
    • In ecology: 1,130 out of 2,862
  • Year to date:
    • Site-wide: 57,453 out of 67,042
  • Since beginning of last month:
    • Site-wide: 58,281 out of 67,042

Integrating Host Response and Unbiased Microbe Detection for Lower Respiratory Tract Infection Diagnosis in Critically Ill Adults

genomics more details view paper
  • Downloaded 304 times
  • Download rankings, all-time:
    • Site-wide: 35,638 out of 67,042
    • In genomics: 3,300 out of 4,558
  • Year to date:
    • Site-wide: 46,084 out of 67,042
  • Since beginning of last month:
    • Site-wide: 48,113 out of 67,042

Developmental loci harbor clusters of accelerated regions that evolved independently in ape lineages

evolutionary biology more details view paper
  • Downloaded 283 times
  • Download rankings, all-time:
    • Site-wide: 37,739 out of 67,042
    • In evolutionary biology: 2,793 out of 4,461
  • Year to date:
    • Site-wide: 57,011 out of 67,042
  • Since beginning of last month:
    • Site-wide: 40,664 out of 67,042

Semi-supervised identification of cell populations in single-cell ATAC-seq

bioinformatics more details view paper
  • Downloaded 279 times
  • Download rankings, all-time:
    • Site-wide: 38,208 out of 67,042
    • In bioinformatics: 4,628 out of 6,613
  • Year to date:
    • Site-wide: 15,991 out of 67,042
  • Since beginning of last month:
    • Site-wide: 442 out of 67,042

Drug resistant gut bacteria mimic a host mechanism for anticancer drug clearance

microbiology more details view paper
  • Downloaded 187 times
  • Download rankings, all-time:
    • Site-wide: 49,880 out of 67,042
    • In microbiology: 3,567 out of 5,408
  • Year to date:
    • Site-wide: 27,087 out of 67,042
  • Since beginning of last month:
    • Site-wide: 2,516 out of 67,042

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