Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 67,039 bioRxiv papers from 295,099 authors.

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Preprints

Evolutionary dynamics of bacteria in the gut microbiome within and across hosts

• Downloaded 3,387 times
• Download rankings, all-time:
  • Site-wide: 935 out of 67,042
  • In evolutionary biology: 30 out of 4,461
• Year to date:
  • Site-wide: 3,728 out of 67,042
• Since beginning of last month:
  • Site-wide: 14,723 out of 67,042

American Gut: an Open Platform for Citizen-Science Microbiome Research

• Downloaded 3,030 times
• Download rankings, all-time:
  • Site-wide: 1,155 out of 67,042
  • In microbiology: 23 out of 5,408
• Year to date:
  • Site-wide: 6,233 out of 67,042
• Since beginning of last month:
  • Site-wide: 9,000 out of 67,042

An integrated metagenomics pipeline for strain profiling reveals novel patterns of transmission and global biogeography of bacteria

• Downloaded 2,603 times
• Download rankings, all-time:
  • Site-wide: 1,504 out of 67,042
  • In genomics: 338 out of 4,558
• Year to date:
  • Site-wide: 27,115 out of 67,042
• Since beginning of last month:
  • Site-wide: 41,466 out of 67,042

Transcription Factors Recognize DNA Shape Without Nucleotide Recognition

• Downloaded 2,504 times
• Download rankings, all-time:
  • Site-wide: 1,617 out of 67,042
  • In systems biology: 36 out of 1,863
• Year to date:
  • Site-wide: 24,309 out of 67,042
• Since beginning of last month:
  • Site-wide: 53,495 out of 67,042

Chromatin features constrain structural variation across evolutionary timescales

• Downloaded 2,477 times
• Download rankings, all-time:
  • Site-wide: 1,652 out of 67,042
  • In genomics: 365 out of 4,558
• Year to date:
  • Site-wide: 8,987 out of 67,042
• Since beginning of last month:
  • Site-wide: 43,752 out of 67,042

Massively parallel dissection of human accelerated regions in human and chimpanzee neural progenitors

• Downloaded 2,134 times
• Download rankings, all-time:
  • Site-wide: 2,168 out of 67,042
  • In evolutionary biology: 93 out of 4,461
• Year to date:
  • Site-wide: 3,505 out of 67,042
• Since beginning of last month:
  • Site-wide: 6,999 out of 67,042

Predicting 3D genome folding from DNA sequence

• Downloaded 1,740 times
• Download rankings, all-time:
  • Site-wide: 3,064 out of 67,042
  • In genomics: 602 out of 4,558
• Year to date:
  • Site-wide: 690 out of 67,042
• Since beginning of last month:
  • Site-wide: 306 out of 67,042

A unified sequence catalogue of over 280,000 genomes obtained from the human gut microbiome

• Downloaded 1,681 times
• Download rankings, all-time:
  • Site-wide: 3,247 out of 67,042
  • In microbiology: 93 out of 5,408
• Year to date:
  • Site-wide: 747 out of 67,042
• Since beginning of last month:
  • Site-wide: 438 out of 67,042

Principles of Meiotic Chromosome Assembly

• Downloaded 1,655 times
• Download rankings, all-time:
  • Site-wide: 3,328 out of 67,042
  • In molecular biology: 97 out of 2,139
• Year to date:
  • Site-wide: 2,366 out of 67,042
• Since beginning of last month:
  • Site-wide: 20,444 out of 67,042

Average genome size estimation enables accurate quantification of gene family abundance and sheds light on the functional ecology of the human microbiome

• Downloaded 1,569 times
• Download rankings, all-time:
  • Site-wide: 3,636 out of 67,042
  • In bioinformatics: 731 out of 6,613
• Year to date:
  • Site-wide: 60,251 out of 67,042
• Since beginning of last month:
  • Site-wide: 64,930 out of 67,042

A high-resolution, chromosome-assigned Komodo dragon genome reveals adaptations in the cardiovascular, muscular, and chemosensory systems of monitor lizards

• Downloaded 1,392 times
• Download rankings, all-time:
  • Site-wide: 4,474 out of 67,042
  • In genomics: 803 out of 4,558
• Year to date:
  • Site-wide: 1,060 out of 67,042
• Since beginning of last month:
  • Site-wide: 11,811 out of 67,042

Phylogeny-corrected identification of microbial gene families relevant to human gut colonization

• Downloaded 1,351 times
• Download rankings, all-time:
  • Site-wide: 4,692 out of 67,042
  • In bioinformatics: 912 out of 6,613
• Year to date:
  • Site-wide: 19,294 out of 67,042
• Since beginning of last month:
  • Site-wide: 33,584 out of 67,042

Topical Silver Diamine Fluoride For Dental Caries Arrest In Preschool Children: A Randomized Controlled Trial

• Downloaded 1,258 times
• Download rankings, all-time:
  • Site-wide: 5,271 out of 67,042
  • In clinical trials: 12 out of 99
• Year to date:
  • Site-wide: 15,957 out of 67,042
• Since beginning of last month:
  • Site-wide: 30,518 out of 67,042

Proteobacteria drive significant functional variability in the human gut microbiome

• Downloaded 1,247 times
• Download rankings, all-time:
  • Site-wide: 5,347 out of 67,042
  • In bioinformatics: 1,024 out of 6,613
• Year to date:
  • Site-wide: 51,609 out of 67,042
• Since beginning of last month:
  • Site-wide: 52,999 out of 67,042

Protein binding and methylation on looping chromatin accurately predict distal regulatory interactions

• Downloaded 1,194 times
• Download rankings, all-time:
  • Site-wide: 5,744 out of 67,042
  • In bioinformatics: 1,093 out of 6,613
• Year to date:
  • Site-wide: 63,526 out of 67,042
• Since beginning of last month:
  • Site-wide: 40,744 out of 67,042

Most regulatory interactions are not in linkage disequilibrium

• Downloaded 1,187 times
• Download rankings, all-time:
  • Site-wide: 5,803 out of 67,042
  • In genomics: 980 out of 4,558
• Year to date:
  • Site-wide: 12,666 out of 67,042
• Since beginning of last month:
  • Site-wide: 29,363 out of 67,042

Genomic analyses for age at menarche identify 389 independent signals and indicate BMI-independent effects of puberty timing on cancer susceptibility

• Downloaded 1,109 times
• Download rankings, all-time:
  • Site-wide: 6,531 out of 67,042
  • In genomics: 1,072 out of 4,558
• Year to date:
  • Site-wide: 44,630 out of 67,042
• Since beginning of last month:
  • Site-wide: 63,622 out of 67,042

Development of Inflammatory Bowel Disease is Linked to a Longitudinal Restructuring of the Gut Metagenome in Mice

• Downloaded 1,076 times
• Download rankings, all-time:
  • Site-wide: 6,857 out of 67,042
  • In microbiology: 268 out of 5,408
• Year to date:
  • Site-wide: 44,956 out of 67,042
• Since beginning of last month:
  • Site-wide: 37,013 out of 67,042

Climate change will lead to pronounced shifts in the diversity of soil microbial communities

• Downloaded 836 times
• Download rankings, all-time:
  • Site-wide: 10,209 out of 67,042
  • In ecology: 244 out of 2,862
• Year to date:
  • Site-wide: 22,417 out of 67,042
• Since beginning of last month:
  • Site-wide: 38,326 out of 67,042

Coevolutionary analyses require phylogenetically deep alignments and better null models to accurately detect inter-protein contacts within and between species

• Downloaded 731 times
• Download rankings, all-time:
  • Site-wide: 12,495 out of 67,042
  • In evolutionary biology: 857 out of 4,461
• Year to date:
  • Site-wide: 57,716 out of 67,042
• Since beginning of last month:
  • Site-wide: 50,936 out of 67,042

Automated and accurate estimation of gene family abundance from shotgun metagenomes

• Downloaded 716 times
• Download rankings, all-time:
  • Site-wide: 12,873 out of 67,042
  • In bioinformatics: 2,102 out of 6,613
• Year to date:
  • Site-wide: 61,160 out of 67,042
• Since beginning of last month:
  • Site-wide: 53,663 out of 67,042

Features of ChIP-seq data peak calling algorithms with good operating characteristics

• Downloaded 701 times
• Download rankings, all-time:
  • Site-wide: 13,269 out of 67,042
  • In bioinformatics: 2,160 out of 6,613
• Year to date:
  • Site-wide: 64,839 out of 67,042
• Since beginning of last month:
  • Site-wide: 54,197 out of 67,042

A most wanted list of conserved protein families with no known domains

• Downloaded 698 times
• Download rankings, all-time:
  • Site-wide: 13,349 out of 67,042
  • In genomics: 1,815 out of 4,558
• Year to date:
  • Site-wide: 62,014 out of 67,042
• Since beginning of last month:
  • Site-wide: 62,274 out of 67,042

AlleleAnalyzer: a tool for personalized and allele-specific sgRNA design

• Downloaded 591 times
• Download rankings, all-time:
  • Site-wide: 16,825 out of 67,042
  • In bioinformatics: 2,589 out of 6,613
• Year to date:
  • Site-wide: 22,824 out of 67,042
• Since beginning of last month:
  • Site-wide: 12,732 out of 67,042

Unique Transcription Factor Functions Regulate Epigenetic and Transcriptional Dynamics During Cardiac Reprogramming

• Downloaded 430 times
• Download rankings, all-time:
  • Site-wide: 25,031 out of 67,042
  • In molecular biology: 724 out of 2,139
• Year to date:
  • Site-wide: 8,131 out of 67,042
• Since beginning of last month:
  • Site-wide: 13,826 out of 67,042

Evolution of mechanisms that control mating in Drosophila males

• Downloaded 391 times
• Download rankings, all-time:
  • Site-wide: 27,766 out of 67,042
  • In neuroscience: 4,779 out of 12,017
• Year to date:
  • Site-wide: 52,379 out of 67,042
• Since beginning of last month:
  • Site-wide: 38,417 out of 67,042

Bat Accelerated Regions Identify a Bat Forelimb Specific Enhancer in the HoxD Locus

• Downloaded 377 times
• Download rankings, all-time:
  • Site-wide: 28,908 out of 67,042
  • In evolutionary biology: 2,165 out of 4,461
• Year to date:
  • Site-wide: 60,392 out of 67,042
• Since beginning of last month:
  • Site-wide: 60,204 out of 67,042

phylogenize: correcting for phylogeny reveals genes associated with microbial distributions

• Downloaded 368 times
• Download rankings, all-time:
  • Site-wide: 29,685 out of 67,042
  • In bioinformatics: 3,905 out of 6,613
• Year to date:
  • Site-wide: 21,695 out of 67,042
• Since beginning of last month:
  • Site-wide: 32,960 out of 67,042

The Epstein-Barr virus episome maneuvers between nuclear chromatin compartments during reactivation

• Downloaded 353 times
• Download rankings, all-time:
  • Site-wide: 30,953 out of 67,042
  • In microbiology: 1,886 out of 5,408
• Year to date:
  • Site-wide: 40,914 out of 67,042
• Since beginning of last month:
  • Site-wide: 24,894 out of 67,042

A Chromatin Accessibility Atlas of the Developing Human Telencephalon

• Downloaded 332 times
• Download rankings, all-time:
  • Site-wide: 32,848 out of 67,042
  • In neuroscience: 5,697 out of 12,017
• Year to date:
  • Site-wide: 12,424 out of 67,042
• Since beginning of last month:
  • Site-wide: 1,365 out of 67,042

Global ecotypes in the ubiquitous marine clade SAR86

• Downloaded 331 times
• Download rankings, all-time:
  • Site-wide: 32,950 out of 67,042
  • In ecology: 1,045 out of 2,862
• Year to date:
  • Site-wide: 12,486 out of 67,042
• Since beginning of last month:
  • Site-wide: 24,191 out of 67,042

A computational framework for detecting signatures of accelerated somatic evolution in cancer genomes

• Downloaded 328 times
• Download rankings, all-time:
  • Site-wide: 33,244 out of 67,042
  • In bioinformatics: 4,187 out of 6,613
• Year to date:
  • Site-wide: 57,879 out of 67,042
• Since beginning of last month:
  • Site-wide: 17,952 out of 67,042

A Metagenomic Comparison of Tracheal Aspirate and Mini-Bronchial Alveolar Lavage for Assessment of Respiratory Microbiota

• Downloaded 314 times
• Download rankings, all-time:
  • Site-wide: 34,609 out of 67,042
  • In microbiology: 2,204 out of 5,408
• Year to date:
  • Site-wide: 23,594 out of 67,042
• Since beginning of last month:
  • Site-wide: 17,493 out of 67,042

The geometry of the distance-decay of similarity in ecological communities

• Downloaded 311 times
• Download rankings, all-time:
  • Site-wide: 34,904 out of 67,042
  • In ecology: 1,130 out of 2,862
• Year to date:
  • Site-wide: 57,453 out of 67,042
• Since beginning of last month:
  • Site-wide: 58,281 out of 67,042

Integrating Host Response and Unbiased Microbe Detection for Lower Respiratory Tract Infection Diagnosis in Critically Ill Adults

• Downloaded 304 times
• Download rankings, all-time:
  • Site-wide: 35,638 out of 67,042
  • In genomics: 3,300 out of 4,558
• Year to date:
  • Site-wide: 46,084 out of 67,042
• Since beginning of last month:
  • Site-wide: 48,113 out of 67,042

Developmental loci harbor clusters of accelerated regions that evolved independently in ape lineages

• Downloaded 283 times
• Download rankings, all-time:
  • Site-wide: 37,739 out of 67,042
  • In evolutionary biology: 2,793 out of 4,461
• Year to date:
  • Site-wide: 57,011 out of 67,042
• Since beginning of last month:
  • Site-wide: 40,664 out of 67,042

Semi-supervised identification of cell populations in single-cell ATAC-seq

• Downloaded 279 times
• Download rankings, all-time:
  • Site-wide: 38,208 out of 67,042
  • In bioinformatics: 4,628 out of 6,613
• Year to date:
  • Site-wide: 15,991 out of 67,042
• Since beginning of last month:
  • Site-wide: 442 out of 67,042

Drug resistant gut bacteria mimic a host mechanism for anticancer drug clearance

• Downloaded 187 times
• Download rankings, all-time:
  • Site-wide: 49,880 out of 67,042
  • In microbiology: 3,567 out of 5,408
• Year to date:
  • Site-wide: 27,087 out of 67,042
• Since beginning of last month:
  • Site-wide: 2,516 out of 67,042