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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 70,086 bioRxiv papers from 306,114 authors.

Author: Katherine S. Pollard

Rankings

  • All-time downloads: 45,496 (rank: 337 out of 306,093)
  • Categories:
    • bioinformatics: 8,552 (rank: 444 out of 26,707)
    • clinical trials: 1,289 (rank: 135 (tie) out of 1,037)
    • developmental biology: 1,488 (rank: 892 (tie) out of 11,738)
    • ecology: 1,532 (rank: 891 out of 12,338)
    • evolutionary biology: 7,024 (rank: 114 out of 16,485)
    • genomics: 11,814 (rank: 876 out of 34,673)
    • microbiology: 7,394 (rank: 80 out of 31,599)
    • molecular biology: 3,028 (rank: 359 out of 14,933)
    • neuroscience: 857 (rank: 13,496 (tie) out of 51,648)
    • systems biology: 2,518 (rank: 599 (tie) out of 9,231)

Downloads per author, site-wide

Preprints

Evolutionary dynamics of bacteria in the gut microbiome within and across hosts

evolutionary biology more details view paper
  • Downloaded 3,410 times
  • Download rankings, all-time:
    • Site-wide: 966 out of 70,077
    • In evolutionary biology: 31 out of 4,602
  • Year to date:
    • Site-wide: 18,975 out of 70,077
  • Since beginning of last month:
    • Site-wide: 25,139 out of 70,077

American Gut: an Open Platform for Citizen-Science Microbiome Research

microbiology more details view paper
  • Downloaded 3,102 times
  • Download rankings, all-time:
    • Site-wide: 1,169 out of 70,077
    • In microbiology: 23 out of 5,685
  • Year to date:
    • Site-wide: 2,959 out of 70,077
  • Since beginning of last month:
    • Site-wide: 5,537 out of 70,077

An integrated metagenomics pipeline for strain profiling reveals novel patterns of transmission and global biogeography of bacteria

genomics more details view paper
  • Downloaded 2,631 times
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    • Site-wide: 1,555 out of 70,077
    • In genomics: 348 out of 4,696
  • Year to date:
    • Site-wide: 17,129 out of 70,077
  • Since beginning of last month:
    • Site-wide: 27,642 out of 70,077

Transcription Factors Recognize DNA Shape Without Nucleotide Recognition

systems biology more details view paper
  • Downloaded 2,518 times
  • Download rankings, all-time:
    • Site-wide: 1,688 out of 70,077
    • In systems biology: 37 out of 1,930
  • Year to date:
    • Site-wide: 20,353 out of 70,077
  • Since beginning of last month:
    • Site-wide: 61,839 out of 70,077

Chromatin features constrain structural variation across evolutionary timescales

genomics more details view paper
  • Downloaded 2,488 times
  • Download rankings, all-time:
    • Site-wide: 1,736 out of 70,077
    • In genomics: 384 out of 4,696
  • Year to date:
    • Site-wide: 40,945 out of 70,077
  • Since beginning of last month:
    • Site-wide: 48,587 out of 70,077

Massively parallel dissection of human accelerated regions in human and chimpanzee neural progenitors

evolutionary biology more details view paper
  • Downloaded 2,196 times
  • Download rankings, all-time:
    • Site-wide: 2,168 out of 70,077
    • In evolutionary biology: 88 out of 4,602
  • Year to date:
    • Site-wide: 15,573 out of 70,077
  • Since beginning of last month:
    • Site-wide: 6,634 out of 70,077

A unified sequence catalogue of over 280,000 genomes obtained from the human gut microbiome

microbiology more details view paper
  • Downloaded 1,983 times
  • Download rankings, all-time:
    • Site-wide: 2,586 out of 70,077
    • In microbiology: 65 out of 5,685
  • Year to date:
    • Site-wide: 721 out of 70,077
  • Since beginning of last month:
    • Site-wide: 556 out of 70,077

Predicting 3D genome folding from DNA sequence

genomics more details view paper
  • Downloaded 1,897 times
  • Download rankings, all-time:
    • Site-wide: 2,778 out of 70,077
    • In genomics: 557 out of 4,696
  • Year to date:
    • Site-wide: 598 out of 70,077
  • Since beginning of last month:
    • Site-wide: 2,096 out of 70,077

Principles of Meiotic Chromosome Assembly

molecular biology more details view paper
  • Downloaded 1,686 times
  • Download rankings, all-time:
    • Site-wide: 3,405 out of 70,077
    • In molecular biology: 99 out of 2,257
  • Year to date:
    • Site-wide: 16,650 out of 70,077
  • Since beginning of last month:
    • Site-wide: 19,010 out of 70,077

Average genome size estimation enables accurate quantification of gene family abundance and sheds light on the functional ecology of the human microbiome

bioinformatics more details view paper
  • Downloaded 1,575 times
  • Download rankings, all-time:
    • Site-wide: 3,822 out of 70,077
    • In bioinformatics: 766 out of 6,876
  • Year to date:
    • Site-wide: 65,505 out of 70,077
  • Since beginning of last month:
    • Site-wide: 54,213 out of 70,077

Single cell epigenomic atlas of the developing human brain and organoids

developmental biology more details view paper
  • Downloaded 1,488 times
  • Download rankings, all-time:
    • Site-wide: 4,214 out of 70,077
    • In developmental biology: 74 out of 2,095
  • Year to date:
    • Site-wide: 3 out of 70,077
  • Since beginning of last month:
    • Site-wide: 2,043 out of 70,077

A high-resolution, chromosome-assigned Komodo dragon genome reveals adaptations in the cardiovascular, muscular, and chemosensory systems of monitor lizards

genomics more details view paper
  • Downloaded 1,434 times
  • Download rankings, all-time:
    • Site-wide: 4,496 out of 70,077
    • In genomics: 806 out of 4,696
  • Year to date:
    • Site-wide: 23,554 out of 70,077
  • Since beginning of last month:
    • Site-wide: 9,447 out of 70,077

Phylogeny-corrected identification of microbial gene families relevant to human gut colonization

bioinformatics more details view paper
  • Downloaded 1,383 times
  • Download rankings, all-time:
    • Site-wide: 4,781 out of 70,077
    • In bioinformatics: 920 out of 6,876
  • Year to date:
    • Site-wide: 16,801 out of 70,077
  • Since beginning of last month:
    • Site-wide: 16,748 out of 70,077

Topical Silver Diamine Fluoride For Dental Caries Arrest In Preschool Children: A Randomized Controlled Trial

clinical trials more details view paper
  • Downloaded 1,289 times
  • Download rankings, all-time:
    • Site-wide: 5,349 out of 70,077
    • In clinical trials: 12 out of 99
  • Year to date:
    • Site-wide: 48,695 out of 70,077
  • Since beginning of last month:
    • Site-wide: 12,980 out of 70,077

Proteobacteria drive significant functional variability in the human gut microbiome

bioinformatics more details view paper
  • Downloaded 1,256 times
  • Download rankings, all-time:
    • Site-wide: 5,578 out of 70,077
    • In bioinformatics: 1,061 out of 6,876
  • Year to date:
    • Site-wide: 62,391 out of 70,077
  • Since beginning of last month:
    • Site-wide: 46,253 out of 70,077

Most regulatory interactions are not in linkage disequilibrium

genomics more details view paper
  • Downloaded 1,211 times
  • Download rankings, all-time:
    • Site-wide: 5,943 out of 70,077
    • In genomics: 989 out of 4,696
  • Year to date:
    • Site-wide: 23,919 out of 70,077
  • Since beginning of last month:
    • Site-wide: 38,828 out of 70,077

Protein binding and methylation on looping chromatin accurately predict distal regulatory interactions

bioinformatics more details view paper
  • Downloaded 1,204 times
  • Download rankings, all-time:
    • Site-wide: 6,010 out of 70,077
    • In bioinformatics: 1,130 out of 6,876
  • Year to date:
    • Site-wide: 21,777 out of 70,077
  • Since beginning of last month:
    • Site-wide: 59,948 out of 70,077

Genomic analyses for age at menarche identify 389 independent signals and indicate BMI-independent effects of puberty timing on cancer susceptibility

genomics more details view paper
  • Downloaded 1,115 times
  • Download rankings, all-time:
    • Site-wide: 6,849 out of 70,077
    • In genomics: 1,113 out of 4,696
  • Year to date:
    • Site-wide: 58,321 out of 70,077
  • Since beginning of last month:
    • Site-wide: 54,802 out of 70,077

Development of Inflammatory Bowel Disease is Linked to a Longitudinal Restructuring of the Gut Metagenome in Mice

microbiology more details view paper
  • Downloaded 1,084 times
  • Download rankings, all-time:
    • Site-wide: 7,186 out of 70,077
    • In microbiology: 287 out of 5,685
  • Year to date:
    • Site-wide: 63,894 out of 70,077
  • Since beginning of last month:
    • Site-wide: 38,672 out of 70,077

Molecular basis of CTCF binding polarity in genome folding

molecular biology more details view paper
  • Downloaded 866 times
  • Download rankings, all-time:
    • Site-wide: 10,269 out of 70,077
    • In molecular biology: 309 out of 2,257
  • Year to date:
    • Site-wide: 313 out of 70,077
  • Since beginning of last month:
    • Site-wide: 59 out of 70,077

Climate change will lead to pronounced shifts in the diversity of soil microbial communities

ecology more details view paper
  • Downloaded 857 times
  • Download rankings, all-time:
    • Site-wide: 10,446 out of 70,077
    • In ecology: 244 out of 2,998
  • Year to date:
    • Site-wide: 21,153 out of 70,077
  • Since beginning of last month:
    • Site-wide: 34,237 out of 70,077

Coevolutionary analyses require phylogenetically deep alignments and better null models to accurately detect inter-protein contacts within and between species

evolutionary biology more details view paper
  • Downloaded 745 times
  • Download rankings, all-time:
    • Site-wide: 12,884 out of 70,077
    • In evolutionary biology: 873 out of 4,602
  • Year to date:
    • Site-wide: 21,910 out of 70,077
  • Since beginning of last month:
    • Site-wide: 43,653 out of 70,077

A most wanted list of conserved protein families with no known domains

genomics more details view paper
  • Downloaded 722 times
  • Download rankings, all-time:
    • Site-wide: 13,470 out of 70,077
    • In genomics: 1,827 out of 4,696
  • Year to date:
    • Site-wide: 37,661 out of 70,077
  • Since beginning of last month:
    • Site-wide: 19,051 out of 70,077

Automated and accurate estimation of gene family abundance from shotgun metagenomes

bioinformatics more details view paper
  • Downloaded 721 times
  • Download rankings, all-time:
    • Site-wide: 13,513 out of 70,077
    • In bioinformatics: 2,189 out of 6,876
  • Year to date:
    • Site-wide: 52,569 out of 70,077
  • Since beginning of last month:
    • Site-wide: 64,666 out of 70,077

Features of ChIP-seq data peak calling algorithms with good operating characteristics

bioinformatics more details view paper
  • Downloaded 708 times
  • Download rankings, all-time:
    • Site-wide: 13,859 out of 70,077
    • In bioinformatics: 2,236 out of 6,876
  • Year to date:
    • Site-wide: 39,911 out of 70,077
  • Since beginning of last month:
    • Site-wide: 59,140 out of 70,077

AlleleAnalyzer: a tool for personalized and allele-specific sgRNA design

bioinformatics more details view paper
  • Downloaded 595 times
  • Download rankings, all-time:
    • Site-wide: 17,787 out of 70,077
    • In bioinformatics: 2,699 out of 6,876
  • Year to date:
    • Site-wide: 60,805 out of 70,077
  • Since beginning of last month:
    • Site-wide: 19,022 out of 70,077

Unique Transcription Factor Functions Regulate Epigenetic and Transcriptional Dynamics During Cardiac Reprogramming

molecular biology more details view paper
  • Downloaded 476 times
  • Download rankings, all-time:
    • Site-wide: 23,722 out of 70,077
    • In molecular biology: 699 out of 2,257
  • Year to date:
    • Site-wide: 21,163 out of 70,077
  • Since beginning of last month:
    • Site-wide: 7,863 out of 70,077

A Chromatin Accessibility Atlas of the Developing Human Telencephalon

neuroscience more details view paper
  • Downloaded 459 times
  • Download rankings, all-time:
    • Site-wide: 24,796 out of 70,077
    • In neuroscience: 4,249 out of 12,597
  • Year to date:
    • Site-wide: 1,263 out of 70,077
  • Since beginning of last month:
    • Site-wide: 3,066 out of 70,077

Evolution of mechanisms that control mating in Drosophila males

neuroscience more details view paper
  • Downloaded 398 times
  • Download rankings, all-time:
    • Site-wide: 29,079 out of 70,077
    • In neuroscience: 5,014 out of 12,597
  • Year to date:
    • Site-wide: 66,347 out of 70,077
  • Since beginning of last month:
    • Site-wide: 54,279 out of 70,077

phylogenize: correcting for phylogeny reveals genes associated with microbial distributions

bioinformatics more details view paper
  • Downloaded 395 times
  • Download rankings, all-time:
    • Site-wide: 29,351 out of 70,077
    • In bioinformatics: 3,857 out of 6,876
  • Year to date:
    • Site-wide: 16,180 out of 70,077
  • Since beginning of last month:
    • Site-wide: 22,511 out of 70,077

Bat Accelerated Regions Identify a Bat Forelimb Specific Enhancer in the HoxD Locus

evolutionary biology more details view paper
  • Downloaded 382 times
  • Download rankings, all-time:
    • Site-wide: 30,439 out of 70,077
    • In evolutionary biology: 2,267 out of 4,602
  • Year to date:
    • Site-wide: 45,340 out of 70,077
  • Since beginning of last month:
    • Site-wide: 66,507 out of 70,077

Semi-supervised identification of cell populations in single-cell ATAC-seq

bioinformatics more details view paper
  • Downloaded 380 times
  • Download rankings, all-time:
    • Site-wide: 30,621 out of 70,077
    • In bioinformatics: 3,972 out of 6,876
  • Year to date:
    • Site-wide: 1,567 out of 70,077
  • Since beginning of last month:
    • Site-wide: 3,963 out of 70,077

The Epstein-Barr virus episome maneuvers between nuclear chromatin compartments during reactivation

microbiology more details view paper
  • Downloaded 364 times
  • Download rankings, all-time:
    • Site-wide: 32,040 out of 70,077
    • In microbiology: 1,981 out of 5,685
  • Year to date:
    • Site-wide: 23,879 out of 70,077
  • Since beginning of last month:
    • Site-wide: 30,749 out of 70,077

Global ecotypes in the ubiquitous marine clade SAR86

ecology more details view paper
  • Downloaded 354 times
  • Download rankings, all-time:
    • Site-wide: 32,938 out of 70,077
    • In ecology: 1,017 out of 2,998
  • Year to date:
    • Site-wide: 11,173 out of 70,077
  • Since beginning of last month:
    • Site-wide: 30,996 out of 70,077

A Metagenomic Comparison of Tracheal Aspirate and Mini-Bronchial Alveolar Lavage for Assessment of Respiratory Microbiota

microbiology more details view paper
  • Downloaded 340 times
  • Download rankings, all-time:
    • Site-wide: 34,270 out of 70,077
    • In microbiology: 2,160 out of 5,685
  • Year to date:
    • Site-wide: 17,157 out of 70,077
  • Since beginning of last month:
    • Site-wide: 14,388 out of 70,077

A computational framework for detecting signatures of accelerated somatic evolution in cancer genomes

bioinformatics more details view paper
  • Downloaded 335 times
  • Download rankings, all-time:
    • Site-wide: 34,798 out of 70,077
    • In bioinformatics: 4,328 out of 6,876
  • Year to date:
    • Site-wide: 37,115 out of 70,077
  • Since beginning of last month:
    • Site-wide: 35,593 out of 70,077

The geometry of the distance-decay of similarity in ecological communities

ecology more details view paper
  • Downloaded 321 times
  • Download rankings, all-time:
    • Site-wide: 36,194 out of 70,077
    • In ecology: 1,169 out of 2,998
  • Year to date:
    • Site-wide: 53,179 out of 70,077
  • Since beginning of last month:
    • Site-wide: 50,480 out of 70,077

Integrating Host Response and Unbiased Microbe Detection for Lower Respiratory Tract Infection Diagnosis in Critically Ill Adults

genomics more details view paper
  • Downloaded 316 times
  • Download rankings, all-time:
    • Site-wide: 36,679 out of 70,077
    • In genomics: 3,395 out of 4,696
  • Year to date:
    • Site-wide: 31,430 out of 70,077
  • Since beginning of last month:
    • Site-wide: 44,896 out of 70,077

Longitudinal linked read sequencing reveals ecological and evolutionary responses of a human gut microbiome during antibiotic treatment

microbiology more details view paper
  • Downloaded 300 times
  • Download rankings, all-time:
    • Site-wide: 38,381 out of 70,077
    • In microbiology: 2,493 out of 5,685
  • Year to date:
    • Site-wide: 583 out of 70,077
  • Since beginning of last month:
    • Site-wide: 513 out of 70,077

Developmental loci harbor clusters of accelerated regions that evolved independently in ape lineages

evolutionary biology more details view paper
  • Downloaded 291 times
  • Download rankings, all-time:
    • Site-wide: 39,290 out of 70,077
    • In evolutionary biology: 2,884 out of 4,602
  • Year to date:
    • Site-wide: 34,624 out of 70,077
  • Since beginning of last month:
    • Site-wide: 51,069 out of 70,077

Drug resistant gut bacteria mimic a host mechanism for anticancer drug clearance

microbiology more details view paper
  • Downloaded 221 times
  • Download rankings, all-time:
    • Site-wide: 48,164 out of 70,077
    • In microbiology: 3,367 out of 5,685
  • Year to date:
    • Site-wide: 55,211 out of 70,077
  • Since beginning of last month:
    • Site-wide: 8,601 out of 70,077

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