Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 62,933 bioRxiv papers from 279,142 authors.

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Preprints

A Chromatin Accessibility Atlas of the Developing Human Telencephalon

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Predicting 3D genome folding from DNA sequence

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Evolutionary dynamics of bacteria in the gut microbiome within and across hosts

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  • In evolutionary biology: 26 out of 4,228
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American Gut: an Open Platform for Citizen-Science Microbiome Research

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  • In microbiology: 21 out of 5,025
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An integrated metagenomics pipeline for strain profiling reveals novel patterns of transmission and global biogeography of bacteria

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  • In genomics: 324 out of 4,316
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  • Site-wide: 23,240 out of 62,933

Transcription Factors Recognize DNA Shape Without Nucleotide Recognition

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  • In systems biology: 33 out of 1,783
• Year to date:
  • Site-wide: 21,794 out of 62,933
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  • Site-wide: 32,154 out of 62,933

Chromatin features constrain structural variation across evolutionary timescales

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  • In genomics: 347 out of 4,316
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Massively parallel dissection of human accelerated regions in human and chimpanzee neural progenitors

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  • In evolutionary biology: 93 out of 4,228
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  • Site-wide: 5,796 out of 62,933

Principles of Meiotic Chromosome Assembly

• Downloaded 1,600 times
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  • In molecular biology: 94 out of 1,967
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  • Site-wide: 7,279 out of 62,933

Average genome size estimation enables accurate quantification of gene family abundance and sheds light on the functional ecology of the human microbiome

• Downloaded 1,565 times
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  • In bioinformatics: 681 out of 6,251
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  • Site-wide: 56,252 out of 62,933

A high-resolution, chromosome-assigned Komodo dragon genome reveals adaptations in the cardiovascular, muscular, and chemosensory systems of monitor lizards

• Downloaded 1,338 times
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  • In genomics: 791 out of 4,316
• Year to date:
  • Site-wide: 870 out of 62,933
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  • Site-wide: 8,495 out of 62,933

Phylogeny-corrected identification of microbial gene families relevant to human gut colonization

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  • In bioinformatics: 873 out of 6,251
• Year to date:
  • Site-wide: 17,266 out of 62,933
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  • Site-wide: 20,936 out of 62,933

Proteobacteria drive significant functional variability in the human gut microbiome

• Downloaded 1,236 times
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  • In bioinformatics: 972 out of 6,251
• Year to date:
  • Site-wide: 47,575 out of 62,933
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  • Site-wide: 47,586 out of 62,933

Topical Silver Diamine Fluoride For Dental Caries Arrest In Preschool Children: A Randomized Controlled Trial

• Downloaded 1,228 times
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  • Site-wide: 5,048 out of 62,933
  • In clinical trials: 11 out of 99
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  • Site-wide: 14,871 out of 62,933
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  • Site-wide: 26,976 out of 62,933

Protein binding and methylation on looping chromatin accurately predict distal regulatory interactions

• Downloaded 1,183 times
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  • In bioinformatics: 1,034 out of 6,251
• Year to date:
  • Site-wide: 60,004 out of 62,933
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  • Site-wide: 60,603 out of 62,933

Most regulatory interactions are not in linkage disequilibrium

• Downloaded 1,163 times
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  • In genomics: 935 out of 4,316
• Year to date:
  • Site-wide: 11,134 out of 62,933
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  • Site-wide: 17,596 out of 62,933

Genomic analyses for age at menarche identify 389 independent signals and indicate BMI-independent effects of puberty timing on cancer susceptibility

• Downloaded 1,098 times
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  • Site-wide: 6,105 out of 62,933
  • In genomics: 1,015 out of 4,316
• Year to date:
  • Site-wide: 40,356 out of 62,933
• Since beginning of last month:
  • Site-wide: 38,794 out of 62,933

A unified sequence catalogue of over 280,000 genomes obtained from the human gut microbiome

• Downloaded 1,074 times
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  • Site-wide: 6,332 out of 62,933
  • In microbiology: 242 out of 5,025
• Year to date:
  • Site-wide: 1,314 out of 62,933
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  • Site-wide: 38 out of 62,933

Development of Inflammatory Bowel Disease is Linked to a Longitudinal Restructuring of the Gut Metagenome in Mice

• Downloaded 1,060 times
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  • Site-wide: 6,463 out of 62,933
  • In microbiology: 252 out of 5,025
• Year to date:
  • Site-wide: 42,350 out of 62,933
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  • Site-wide: 44,671 out of 62,933

Climate change will lead to pronounced shifts in the diversity of soil microbial communities

• Downloaded 815 times
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  • Site-wide: 9,779 out of 62,933
  • In ecology: 228 out of 2,673
• Year to date:
  • Site-wide: 20,382 out of 62,933
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  • Site-wide: 25,613 out of 62,933

Coevolutionary analyses require phylogenetically deep alignments and better null models to accurately detect inter-protein contacts within and between species

• Downloaded 721 times
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  • Site-wide: 11,677 out of 62,933
  • In evolutionary biology: 822 out of 4,228
• Year to date:
  • Site-wide: 53,779 out of 62,933
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  • Site-wide: 47,753 out of 62,933

Automated and accurate estimation of gene family abundance from shotgun metagenomes

• Downloaded 708 times
• Download rankings, all-time:
  • Site-wide: 11,984 out of 62,933
  • In bioinformatics: 1,994 out of 6,251
• Year to date:
  • Site-wide: 56,652 out of 62,933
• Since beginning of last month:
  • Site-wide: 61,030 out of 62,933

A most wanted list of conserved protein families with no known domains

• Downloaded 694 times
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  • Site-wide: 12,380 out of 62,933
  • In genomics: 1,712 out of 4,316
• Year to date:
  • Site-wide: 56,163 out of 62,933
• Since beginning of last month:
  • Site-wide: 57,402 out of 62,933

Features of ChIP-seq data peak calling algorithms with good operating characteristics

• Downloaded 694 times
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  • Site-wide: 12,379 out of 62,933
  • In bioinformatics: 2,043 out of 6,251
• Year to date:
  • Site-wide: 60,361 out of 62,933
• Since beginning of last month:
  • Site-wide: 54,403 out of 62,933

AlleleAnalyzer: a tool for personalized and allele-specific sgRNA design

• Downloaded 550 times
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  • Site-wide: 17,012 out of 62,933
  • In bioinformatics: 2,603 out of 6,251
• Year to date:
  • Site-wide: 23,668 out of 62,933
• Since beginning of last month:
  • Site-wide: 22,451 out of 62,933

Evolution of mechanisms that control mating in Drosophila males

• Downloaded 381 times
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  • Site-wide: 26,156 out of 62,933
  • In neuroscience: 4,457 out of 11,208
• Year to date:
  • Site-wide: 47,739 out of 62,933
• Since beginning of last month:
  • Site-wide: 38,098 out of 62,933

Unique Transcription Factor Functions Regulate Epigenetic and Transcriptional Dynamics During Cardiac Reprogramming

• Downloaded 379 times
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  • In molecular biology: 748 out of 1,967
• Year to date:
  • Site-wide: 7,751 out of 62,933
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  • Site-wide: 12,387 out of 62,933

Bat Accelerated Regions Identify a Bat Forelimb Specific Enhancer in the HoxD Locus

• Downloaded 370 times
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  • Site-wide: 27,003 out of 62,933
  • In evolutionary biology: 2,053 out of 4,228
• Year to date:
  • Site-wide: 55,501 out of 62,933
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  • Site-wide: 47,671 out of 62,933

phylogenize: correcting for phylogeny reveals genes associated with microbial distributions

• Downloaded 344 times
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  • Site-wide: 29,037 out of 62,933
  • In bioinformatics: 3,835 out of 6,251
• Year to date:
  • Site-wide: 20,068 out of 62,933
• Since beginning of last month:
  • Site-wide: 23,940 out of 62,933

The Epstein-Barr virus episome maneuvers between nuclear chromatin compartments during reactivation

• Downloaded 333 times
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  • Site-wide: 29,979 out of 62,933
  • In microbiology: 1,840 out of 5,025
• Year to date:
  • Site-wide: 39,218 out of 62,933
• Since beginning of last month:
  • Site-wide: 51,606 out of 62,933

A computational framework for detecting signatures of accelerated somatic evolution in cancer genomes

• Downloaded 304 times
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  • Site-wide: 32,594 out of 62,933
  • In bioinformatics: 4,134 out of 6,251
• Year to date:
  • Site-wide: 58,509 out of 62,933
• Since beginning of last month:
  • Site-wide: 54,096 out of 62,933

The geometry of the distance-decay of similarity in ecological communities

• Downloaded 302 times
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  • Site-wide: 32,793 out of 62,933
  • In ecology: 1,076 out of 2,673
• Year to date:
  • Site-wide: 52,700 out of 62,933
• Since beginning of last month:
  • Site-wide: 43,815 out of 62,933

Global ecotypes in the ubiquitous marine clade SAR86

• Downloaded 296 times
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  • Site-wide: 33,341 out of 62,933
  • In ecology: 1,107 out of 2,673
• Year to date:
  • Site-wide: 11,604 out of 62,933
• Since beginning of last month:
  • Site-wide: 12,955 out of 62,933

Integrating Host Response and Unbiased Microbe Detection for Lower Respiratory Tract Infection Diagnosis in Critically Ill Adults

• Downloaded 292 times
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  • Site-wide: 33,665 out of 62,933
  • In genomics: 3,160 out of 4,316
• Year to date:
  • Site-wide: 42,042 out of 62,933
• Since beginning of last month:
  • Site-wide: 56,260 out of 62,933

A Metagenomic Comparison of Tracheal Aspirate and Mini-Bronchial Alveolar Lavage for Assessment of Respiratory Microbiota

• Downloaded 280 times
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  • Site-wide: 34,890 out of 62,933
  • In microbiology: 2,232 out of 5,025
• Year to date:
  • Site-wide: 23,463 out of 62,933
• Since beginning of last month:
  • Site-wide: 25,595 out of 62,933

Developmental loci harbor clusters of accelerated regions that evolved independently in ape lineages

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  • Site-wide: 36,046 out of 62,933
  • In evolutionary biology: 2,711 out of 4,228
• Year to date:
  • Site-wide: 54,170 out of 62,933
• Since beginning of last month:
  • Site-wide: 59,873 out of 62,933