Author: Katherine S. Pollard
- ORCiD: http://orcid.org/0000-0002-9870-6196
- Most recently observed institution: University of California, San Francisco
Rankings
- All-time downloads: 107,935 (rank: 1,752 )
- Categories:
- bioinformatics: 14,654 (rank: 578 )
- clinical trials: 1,707 (rank: 314 (tie) )
- developmental biology: 9,175 (rank: 94 )
- ecology: 2,190 (rank: 1,850 )
- evolutionary biology: 9,920 (rank: 264 )
- gastroenterology: 351 (rank: 1,683 (tie) )
- genetics: 863 (rank: 21,035 (tie) )
- genomics: 26,742 (rank: 480 )
- immunology: 986 (rank: 15,565 (tie) )
- infectious diseases: 14,691 (rank: 5,051 (tie) )
- microbiology: 12,996 (rank: 1,635 )
- molecular biology: 6,337 (rank: 555 )
- neuroscience: 2,510 (rank: 12,026 (tie) )
- systems biology: 2,762 (rank: 1,839 (tie) )
Downloads per author, site-wide
Preprints
Direct detection of SARS-CoV-2 using CRISPR-Cas13a and a mobile phone
infectious diseases more details view paper- Downloaded 12,665 times
- Download rankings, all-time:
- Site-wide: 931
- In infectious diseases: 307
- Year to date:
- Site-wide: 8,657
- Since beginning of last month:
- Site-wide: 7,371
Broad Host Range of SARS-CoV-2 Predicted by Comparative and Structural Analysis of ACE2 in Vertebrates
genomics more details view paper- Downloaded 10,228 times
- Download rankings, all-time:
- Site-wide: 1,227
- In genomics: 75
- Year to date:
- Site-wide: 13,145
- Since beginning of last month:
- Site-wide: 9,498
Single cell epigenomic atlas of the developing human brain and organoids
developmental biology more details view paper- Downloaded 7,995 times
- Download rankings, all-time:
- Site-wide: 1,665
- In developmental biology: 10
- Year to date:
- Site-wide: 16,363
- Since beginning of last month:
- Site-wide: 12,020
A unified sequence catalogue of over 280,000 genomes obtained from the human gut microbiome
microbiology more details view paper- Downloaded 3,970 times
- Download rankings, all-time:
- Site-wide: 4,237
- In microbiology: 280
- Year to date:
- Site-wide: 36,166
- Since beginning of last month:
- Site-wide: 50,653
American Gut: an Open Platform for Citizen-Science Microbiome Research
microbiology more details view paper- Downloaded 3,929 times
- Download rankings, all-time:
- Site-wide: 4,287
- In microbiology: 283
- Year to date:
- Site-wide: 70,461
- Since beginning of last month:
- Site-wide: 149,537
Evolutionary dynamics of bacteria in the gut microbiome within and across hosts
evolutionary biology more details view paper- Downloaded 3,928 times
- Download rankings, all-time:
- Site-wide: 4,289
- In evolutionary biology: 64
- Year to date:
- Site-wide: 80,019
- Since beginning of last month:
- Site-wide: 98,418
Predicting 3D genome folding from DNA sequence
genomics more details view paper- Downloaded 3,905 times
- Download rankings, all-time:
- Site-wide: 4,321
- In genomics: 401
- Year to date:
- Site-wide: 45,588
- Since beginning of last month:
- Site-wide: None
Massively parallel dissection of human accelerated regions in human and chimpanzee neural progenitors
evolutionary biology more details view paper- Downloaded 3,438 times
- Download rankings, all-time:
- Site-wide: 5,204
- In evolutionary biology: 95
- Year to date:
- Site-wide: 16,526
- Since beginning of last month:
- Site-wide: 15,132
An integrated metagenomics pipeline for strain profiling reveals novel patterns of transmission and global biogeography of bacteria
genomics more details view paper- Downloaded 3,292 times
- Download rankings, all-time:
- Site-wide: 5,546
- In genomics: 507
- Year to date:
- Site-wide: 43,799
- Since beginning of last month:
- Site-wide: 76,983
Transcription Factors Recognize DNA Shape Without Nucleotide Recognition
systems biology more details view paper- Downloaded 2,771 times
- Download rankings, all-time:
- Site-wide: 7,100
- In systems biology: 100
- Year to date:
- Site-wide: 141,439
- Since beginning of last month:
- Site-wide: 102,687
Chromatin features constrain structural variation across evolutionary timescales
genomics more details view paper- Downloaded 2,673 times
- Download rankings, all-time:
- Site-wide: 7,487
- In genomics: 690
- Year to date:
- Site-wide: 146,711
- Since beginning of last month:
- Site-wide: 135,037
Accelerated RNA detection using tandem CRISPR nucleases
infectious diseases more details view paper- Downloaded 2,333 times
- Download rankings, all-time:
- Site-wide: 9,165
- In infectious diseases: 1,538
- Year to date:
- Site-wide: 11,026
- Since beginning of last month:
- Site-wide: 7,406
Principles of Meiotic Chromosome Assembly
molecular biology more details view paper- Downloaded 2,076 times
- Download rankings, all-time:
- Site-wide: 10,892
- In molecular biology: 253
- Year to date:
- Site-wide: 112,929
- Since beginning of last month:
- Site-wide: 150,910
A high-resolution, chromosome-assigned Komodo dragon genome reveals adaptations in the cardiovascular, muscular, and chemosensory systems of monitor lizards
genomics more details view paper- Downloaded 2,028 times
- Download rankings, all-time:
- Site-wide: 11,282
- In genomics: 1,065
- Year to date:
- Site-wide: 40,641
- Since beginning of last month:
- Site-wide: 47,442
Molecular basis of CTCF binding polarity in genome folding
molecular biology more details view paper- Downloaded 1,871 times
- Download rankings, all-time:
- Site-wide: 12,710
- In molecular biology: 308
- Year to date:
- Site-wide: 151,748
- Since beginning of last month:
- Site-wide: 170,120
Average genome size estimation enables accurate quantification of gene family abundance and sheds light on the functional ecology of the human microbiome
bioinformatics more details view paper- Downloaded 1,786 times
- Download rankings, all-time:
- Site-wide: 13,570
- In bioinformatics: 1,389
- Year to date:
- Site-wide: 160,688
- Since beginning of last month:
- Site-wide: 167,626
Topical Silver Diamine Fluoride For Dental Caries Arrest In Preschool Children: A Randomized Controlled Trial
clinical trials more details view paper- Downloaded 1,733 times
- Download rankings, all-time:
- Site-wide: 14,226
- In clinical trials: 28
- Year to date:
- Site-wide: 85,607
- Since beginning of last month:
- Site-wide: 52,008
Phylogeny-corrected identification of microbial gene families relevant to human gut colonization
bioinformatics more details view paper- Downloaded 1,620 times
- Download rankings, all-time:
- Site-wide: 15,698
- In bioinformatics: 1,618
- Year to date:
- Site-wide: 156,760
- Since beginning of last month:
- Site-wide: 134,828
Proteobacteria drive significant functional variability in the human gut microbiome
bioinformatics more details view paper- Downloaded 1,518 times
- Download rankings, all-time:
- Site-wide: 17,377
- In bioinformatics: 1,837
- Year to date:
- Site-wide: 112,736
- Since beginning of last month:
- Site-wide: 98,725
Most regulatory interactions are not in linkage disequilibrium
genomics more details view paper- Downloaded 1,505 times
- Download rankings, all-time:
- Site-wide: 17,594
- In genomics: 1,576
- Year to date:
- Site-wide: 127,857
- Since beginning of last month:
- Site-wide: 167,094
Longitudinal linked read sequencing reveals ecological and evolutionary responses of a human gut microbiome during antibiotic treatment
microbiology more details view paper- Downloaded 1,505 times
- Download rankings, all-time:
- Site-wide: 17,603
- In microbiology: 992
- Year to date:
- Site-wide: 54,064
- Since beginning of last month:
- Site-wide: 136,270
A Chromatin Accessibility Atlas of the Developing Human Telencephalon
neuroscience more details view paper- Downloaded 1,419 times
- Download rankings, all-time:
- Site-wide: 19,237
- In neuroscience: 2,139
- Year to date:
- Site-wide: 52,734
- Since beginning of last month:
- Site-wide: 143,356
Genomic analyses for age at menarche identify 389 independent signals and indicate BMI-independent effects of puberty timing on cancer susceptibility
genomics more details view paper- Downloaded 1,360 times
- Download rankings, all-time:
- Site-wide: 20,524
- In genomics: 1,797
- Year to date:
- Site-wide: 92,637
- Since beginning of last month:
- Site-wide: 146,057
An atlas of lamina-associated chromatin across twelve human cell types revealsan intermediate chromatin subtype
developmental biology more details view paper- Downloaded 1,356 times
- Download rankings, all-time:
- Site-wide: 20,618
- In developmental biology: 353
- Year to date:
- Site-wide: 11,392
- Since beginning of last month:
- Site-wide: 16,079
Protein binding and methylation on looping chromatin accurately predict distal regulatory interactions
bioinformatics more details view paper- Downloaded 1,344 times
- Download rankings, all-time:
- Site-wide: 20,891
- In bioinformatics: 2,208
- Year to date:
- Site-wide: 155,658
- Since beginning of last month:
- Site-wide: 127,325
Development of Inflammatory Bowel Disease is Linked to a Longitudinal Restructuring of the Gut Metagenome in Mice
microbiology more details view paper- Downloaded 1,324 times
- Download rankings, all-time:
- Site-wide: 21,372
- In microbiology: 1,190
- Year to date:
- Site-wide: 142,539
- Since beginning of last month:
- Site-wide: 113,238
A Transcriptional Switch Governing Fibroblast Plasticity Underlies Reversibility of Chronic Heart Disease
molecular biology more details view paper- Downloaded 1,317 times
- Download rankings, all-time:
- Site-wide: 21,552
- In molecular biology: 550
- Year to date:
- Site-wide: 86,461
- Since beginning of last month:
- Site-wide: 67,715
Reconstructing the 3D genome organization of Neanderthals reveals that chromatin folding shaped phenotypic and sequence divergence
evolutionary biology more details view paper- Downloaded 1,216 times
- Download rankings, all-time:
- Site-wide: 24,445
- In evolutionary biology: 1,683
- Year to date:
- Site-wide: 952
- Since beginning of last month:
- Site-wide: 4,249
Accurate and sensitive detection of microbial eukaryotes from whole metagenome shotgun sequencing
bioinformatics more details view paper- Downloaded 1,207 times
- Download rankings, all-time:
- Site-wide: 24,726
- In bioinformatics: 2,667
- Year to date:
- Site-wide: 56,625
- Since beginning of last month:
- Site-wide: 64,278
CellWalker integrates single-cell and bulk data to resolve regulatory elements across cell types in complex tissues
bioinformatics more details view paper- Downloaded 1,191 times
- Download rankings, all-time:
- Site-wide: 25,241
- In bioinformatics: 2,688
- Year to date:
- Site-wide: 103,843
- Since beginning of last month:
- Site-wide: None
Unique Transcription Factor Functions Regulate Epigenetic and Transcriptional Dynamics During Cardiac Reprogramming
molecular biology more details view paper- Downloaded 1,133 times
- Download rankings, all-time:
- Site-wide: 27,221
- In molecular biology: 686
- Year to date:
- Site-wide: 95,490
- Since beginning of last month:
- Site-wide: 100,778
Climate change will lead to pronounced shifts in the diversity of soil microbial communities
ecology more details view paper- Downloaded 1,124 times
- Download rankings, all-time:
- Site-wide: 27,572
- In ecology: 444
- Year to date:
- Site-wide: 134,480
- Since beginning of last month:
- Site-wide: 113,988
Ultra-rapid metagenotyping of the human gut microbiome
bioinformatics more details view paper- Downloaded 1,065 times
- Download rankings, all-time:
- Site-wide: 29,842
- In bioinformatics: 3,205
- Year to date:
- Site-wide: 47,616
- Since beginning of last month:
- Site-wide: 76,041
A diet-dependent enzyme from the human gut microbiome promotes Th17 cell accumulation and colitis
immunology more details view paper- Downloaded 1,020 times
- Download rankings, all-time:
- Site-wide: 31,773
- In immunology: 1,082
- Year to date:
- Site-wide: 40,784
- Since beginning of last month:
- Site-wide: 38,049
A conserved enzyme found in diverse human gut bacteria interferes with anticancer drug efficacy
microbiology more details view paper- Downloaded 946 times
- Download rankings, all-time:
- Site-wide: 35,527
- In microbiology: 1,968
- Year to date:
- Site-wide: 97,592
- Since beginning of last month:
- Site-wide: None
Coevolutionary analyses require phylogenetically deep alignments and better null models to accurately detect inter-protein contacts within and between species
evolutionary biology more details view paper- Downloaded 918 times
- Download rankings, all-time:
- Site-wide: 37,175
- In evolutionary biology: 1,454
- Year to date:
- Site-wide: 153,487
- Since beginning of last month:
- Site-wide: 168,174
Integration of Protein Interactome Networks with Congenital Heart Disease Variants Reveals Candidate Disease Genes
genetics more details view paper- Downloaded 916 times
- Download rankings, all-time:
- Site-wide: 37,283
- In genetics: 1,623
- Year to date:
- Site-wide: 33,656
- Since beginning of last month:
- Site-wide: 84,270
Automated and accurate estimation of gene family abundance from shotgun metagenomes
bioinformatics more details view paper- Downloaded 871 times
- Download rankings, all-time:
- Site-wide: 40,039
- In bioinformatics: 4,054
- Year to date:
- Site-wide: 140,934
- Since beginning of last month:
- Site-wide: 113,204
Features of ChIP-seq data peak calling algorithms with good operating characteristics
bioinformatics more details view paper- Downloaded 840 times
- Download rankings, all-time:
- Site-wide: 42,261
- In bioinformatics: 4,253
- Year to date:
- Site-wide: 167,841
- Since beginning of last month:
- Site-wide: 127,268
A most wanted list of conserved protein families with no known domains
genomics more details view paper- Downloaded 836 times
- Download rankings, all-time:
- Site-wide: 42,570
- In genomics: 3,249
- Year to date:
- Site-wide: 143,854
- Since beginning of last month:
- Site-wide: 127,957
AlleleAnalyzer: a tool for personalized and allele-specific sgRNA design
bioinformatics more details view paper- Downloaded 809 times
- Download rankings, all-time:
- Site-wide: 44,670
- In bioinformatics: 4,410
- Year to date:
- Site-wide: 168,027
- Since beginning of last month:
- Site-wide: 164,559
Genome-wide variability in recombination activity is associated with meiotic chromatin organization
genomics more details view paper- Downloaded 705 times
- Download rankings, all-time:
- Site-wide: 54,362
- In genomics: 3,959
- Year to date:
- Site-wide: 76,063
- Since beginning of last month:
- Site-wide: 139,421
A Metagenomic Comparison of Tracheal Aspirate and Mini-Bronchial Alveolar Lavage for Assessment of Respiratory Microbiota
microbiology more details view paper- Downloaded 657 times
- Download rankings, all-time:
- Site-wide: 59,854
- In microbiology: 3,495
- Year to date:
- Site-wide: 167,996
- Since beginning of last month:
- Site-wide: 159,370
phylogenize: correcting for phylogeny reveals genes associated with microbial distributions
bioinformatics more details view paper- Downloaded 628 times
- Download rankings, all-time:
- Site-wide: 63,474
- In bioinformatics: 5,883
- Year to date:
- Site-wide: 156,672
- Since beginning of last month:
- Site-wide: 177,754
Autism risk gene POGZ promotes chromatin accessibility and expression of clustered synaptic genes
neuroscience more details view paper- Downloaded 615 times
- Download rankings, all-time:
- Site-wide: 65,295
- In neuroscience: 9,719
- Year to date:
- Site-wide: 46,784
- Since beginning of last month:
- Site-wide: 90,370
Cell Layers: Uncovering clustering structure and knowledge in unsupervised single-cell transcriptomic analysis
bioinformatics more details view paper- Downloaded 599 times
- Download rankings, all-time:
- Site-wide: 67,386
- In bioinformatics: 6,396
- Year to date:
- Site-wide: 68,253
- Since beginning of last month:
- Site-wide: 92,818
The Epstein-Barr virus episome maneuvers between nuclear chromatin compartments during reactivation
microbiology more details view paper- Downloaded 577 times
- Download rankings, all-time:
- Site-wide: 70,641
- In microbiology: 4,279
- Year to date:
- Site-wide: 153,858
- Since beginning of last month:
- Site-wide: 113,235
Global ecotypes in the ubiquitous marine clade SAR86
ecology more details view paper- Downloaded 564 times
- Download rankings, all-time:
- Site-wide: 72,689
- In ecology: 1,694
- Year to date:
- Site-wide: 167,166
- Since beginning of last month:
- Site-wide: 147,093
Evolution of mechanisms that control mating in Drosophila males
neuroscience more details view paper- Downloaded 543 times
- Download rankings, all-time:
- Site-wide: 76,113
- In neuroscience: 10,507
- Year to date:
- Site-wide: 170,368
- Since beginning of last month:
- Site-wide: 158,474
The geometry of the distance-decay of similarity in ecological communities
ecology more details view paper- Downloaded 530 times
- Download rankings, all-time:
- Site-wide: 78,450
- In ecology: 1,910
- Year to date:
- Site-wide: 116,780
- Since beginning of last month:
- Site-wide: 99,465
Integrating Host Response and Unbiased Microbe Detection for Lower Respiratory Tract Infection Diagnosis in Critically Ill Adults
genomics more details view paper- Downloaded 513 times
- Download rankings, all-time:
- Site-wide: 81,323
- In genomics: 5,207
- Year to date:
- Site-wide: 118,465
- Since beginning of last month:
- Site-wide: 135,261
Bat Accelerated Regions Identify a Bat Forelimb Specific Enhancer in the HoxD Locus
evolutionary biology more details view paper- Downloaded 509 times
- Download rankings, all-time:
- Site-wide: 82,196
- In evolutionary biology: 3,858
- Year to date:
- Site-wide: 161,742
- Since beginning of last month:
- Site-wide: 114,557
A computational framework for detecting signatures of accelerated somatic evolution in cancer genomes
bioinformatics more details view paper- Downloaded 496 times
- Download rankings, all-time:
- Site-wide: 84,543
- In bioinformatics: 7,414
- Year to date:
- Site-wide: 129,278
- Since beginning of last month:
- Site-wide: 134,611
CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements
bioinformatics more details view paper- Downloaded 460 times
- Download rankings, all-time:
- Site-wide: 92,016
- In bioinformatics: 7,982
- Year to date:
- Site-wide: 66,406
- Since beginning of last month:
- Site-wide: 73,392
Developmental loci harbor clusters of accelerated regions that evolved independently in ape lineages
evolutionary biology more details view paper- Downloaded 408 times
- Download rankings, all-time:
- Site-wide: 103,862
- In evolutionary biology: 4,826
- Year to date:
- Site-wide: 169,884
- Since beginning of last month:
- Site-wide: 177,480
Scalable microbial strain inference in metagenomic data using StrainFacts
bioinformatics more details view paper- Downloaded 407 times
- Download rankings, all-time:
- Site-wide: 104,120
- In bioinformatics: 8,249
- Year to date:
- Site-wide: 4,915
- Since beginning of last month:
- Site-wide: 6,493
Strain-resolved analysis in a randomized trial of antibiotic pretreatment and maintenance dose delivery mode with fecal microbiota transplant for ulcerative colitis
gastroenterology more details view paper- Downloaded 402 times
- Download rankings, all-time:
- Site-wide: 105,313
- In gastroenterology: 149
- Year to date:
- Site-wide: 22,456
- Since beginning of last month:
- Site-wide: 39,102
Single cell genome sequencing of laboratory mouse microbiota improves taxonomic and functional resolution of this model microbial community
microbiology more details view paper- Downloaded 185 times
- Download rankings, all-time:
- Site-wide: 165,170
- In microbiology: 12,061
- Year to date:
- Site-wide: 34,253
- Since beginning of last month:
- Site-wide: 141,293
An oligogenic inheritance test detects risk genes and their interactions in congenital heart defects and developmental comorbidities
genetics more details view paper- Downloaded 156 times
- Download rankings, all-time:
- Site-wide: 172,127
- In genetics: None
- Year to date:
- Site-wide: 19,123
- Since beginning of last month:
- Site-wide: 3,174
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News
- 27 Nov 2020: The website and API now include results pulled from medRxiv as well as bioRxiv.
- 18 Dec 2019: We're pleased to announce PanLingua, a new tool that enables you to search for machine-translated bioRxiv preprints using more than 100 different languages.
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- 1 Mar 2019: We now have summary statistics about bioRxiv downloads and submissions.
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