Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 70,086 bioRxiv papers from 306,114 authors.

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Preprints

Evolutionary dynamics of bacteria in the gut microbiome within and across hosts

• Downloaded 3,410 times
• Download rankings, all-time:
  • Site-wide: 966 out of 70,077
  • In evolutionary biology: 31 out of 4,602
• Year to date:
  • Site-wide: 18,975 out of 70,077
• Since beginning of last month:
  • Site-wide: 25,139 out of 70,077

American Gut: an Open Platform for Citizen-Science Microbiome Research

• Downloaded 3,102 times
• Download rankings, all-time:
  • Site-wide: 1,169 out of 70,077
  • In microbiology: 23 out of 5,685
• Year to date:
  • Site-wide: 2,959 out of 70,077
• Since beginning of last month:
  • Site-wide: 5,537 out of 70,077

An integrated metagenomics pipeline for strain profiling reveals novel patterns of transmission and global biogeography of bacteria

• Downloaded 2,631 times
• Download rankings, all-time:
  • Site-wide: 1,555 out of 70,077
  • In genomics: 348 out of 4,696
• Year to date:
  • Site-wide: 17,129 out of 70,077
• Since beginning of last month:
  • Site-wide: 27,642 out of 70,077

Transcription Factors Recognize DNA Shape Without Nucleotide Recognition

• Downloaded 2,518 times
• Download rankings, all-time:
  • Site-wide: 1,688 out of 70,077
  • In systems biology: 37 out of 1,930
• Year to date:
  • Site-wide: 20,353 out of 70,077
• Since beginning of last month:
  • Site-wide: 61,839 out of 70,077

Chromatin features constrain structural variation across evolutionary timescales

• Downloaded 2,488 times
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  • Site-wide: 1,736 out of 70,077
  • In genomics: 384 out of 4,696
• Year to date:
  • Site-wide: 40,945 out of 70,077
• Since beginning of last month:
  • Site-wide: 48,587 out of 70,077

Massively parallel dissection of human accelerated regions in human and chimpanzee neural progenitors

• Downloaded 2,196 times
• Download rankings, all-time:
  • Site-wide: 2,168 out of 70,077
  • In evolutionary biology: 88 out of 4,602
• Year to date:
  • Site-wide: 15,573 out of 70,077
• Since beginning of last month:
  • Site-wide: 6,634 out of 70,077

A unified sequence catalogue of over 280,000 genomes obtained from the human gut microbiome

• Downloaded 1,983 times
• Download rankings, all-time:
  • Site-wide: 2,586 out of 70,077
  • In microbiology: 65 out of 5,685
• Year to date:
  • Site-wide: 721 out of 70,077
• Since beginning of last month:
  • Site-wide: 556 out of 70,077

Predicting 3D genome folding from DNA sequence

• Downloaded 1,897 times
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  • Site-wide: 2,778 out of 70,077
  • In genomics: 557 out of 4,696
• Year to date:
  • Site-wide: 598 out of 70,077
• Since beginning of last month:
  • Site-wide: 2,096 out of 70,077

Principles of Meiotic Chromosome Assembly

• Downloaded 1,686 times
• Download rankings, all-time:
  • Site-wide: 3,405 out of 70,077
  • In molecular biology: 99 out of 2,257
• Year to date:
  • Site-wide: 16,650 out of 70,077
• Since beginning of last month:
  • Site-wide: 19,010 out of 70,077

Average genome size estimation enables accurate quantification of gene family abundance and sheds light on the functional ecology of the human microbiome

• Downloaded 1,575 times
• Download rankings, all-time:
  • Site-wide: 3,822 out of 70,077
  • In bioinformatics: 766 out of 6,876
• Year to date:
  • Site-wide: 65,505 out of 70,077
• Since beginning of last month:
  • Site-wide: 54,213 out of 70,077

Single cell epigenomic atlas of the developing human brain and organoids

• Downloaded 1,488 times
• Download rankings, all-time:
  • Site-wide: 4,214 out of 70,077
  • In developmental biology: 74 out of 2,095
• Year to date:
  • Site-wide: 3 out of 70,077
• Since beginning of last month:
  • Site-wide: 2,043 out of 70,077

A high-resolution, chromosome-assigned Komodo dragon genome reveals adaptations in the cardiovascular, muscular, and chemosensory systems of monitor lizards

• Downloaded 1,434 times
• Download rankings, all-time:
  • Site-wide: 4,496 out of 70,077
  • In genomics: 806 out of 4,696
• Year to date:
  • Site-wide: 23,554 out of 70,077
• Since beginning of last month:
  • Site-wide: 9,447 out of 70,077

Phylogeny-corrected identification of microbial gene families relevant to human gut colonization

• Downloaded 1,383 times
• Download rankings, all-time:
  • Site-wide: 4,781 out of 70,077
  • In bioinformatics: 920 out of 6,876
• Year to date:
  • Site-wide: 16,801 out of 70,077
• Since beginning of last month:
  • Site-wide: 16,748 out of 70,077

Topical Silver Diamine Fluoride For Dental Caries Arrest In Preschool Children: A Randomized Controlled Trial

• Downloaded 1,289 times
• Download rankings, all-time:
  • Site-wide: 5,349 out of 70,077
  • In clinical trials: 12 out of 99
• Year to date:
  • Site-wide: 48,695 out of 70,077
• Since beginning of last month:
  • Site-wide: 12,980 out of 70,077

Proteobacteria drive significant functional variability in the human gut microbiome

• Downloaded 1,256 times
• Download rankings, all-time:
  • Site-wide: 5,578 out of 70,077
  • In bioinformatics: 1,061 out of 6,876
• Year to date:
  • Site-wide: 62,391 out of 70,077
• Since beginning of last month:
  • Site-wide: 46,253 out of 70,077

Most regulatory interactions are not in linkage disequilibrium

• Downloaded 1,211 times
• Download rankings, all-time:
  • Site-wide: 5,943 out of 70,077
  • In genomics: 989 out of 4,696
• Year to date:
  • Site-wide: 23,919 out of 70,077
• Since beginning of last month:
  • Site-wide: 38,828 out of 70,077

Protein binding and methylation on looping chromatin accurately predict distal regulatory interactions

• Downloaded 1,204 times
• Download rankings, all-time:
  • Site-wide: 6,010 out of 70,077
  • In bioinformatics: 1,130 out of 6,876
• Year to date:
  • Site-wide: 21,777 out of 70,077
• Since beginning of last month:
  • Site-wide: 59,948 out of 70,077

Genomic analyses for age at menarche identify 389 independent signals and indicate BMI-independent effects of puberty timing on cancer susceptibility

• Downloaded 1,115 times
• Download rankings, all-time:
  • Site-wide: 6,849 out of 70,077
  • In genomics: 1,113 out of 4,696
• Year to date:
  • Site-wide: 58,321 out of 70,077
• Since beginning of last month:
  • Site-wide: 54,802 out of 70,077

Development of Inflammatory Bowel Disease is Linked to a Longitudinal Restructuring of the Gut Metagenome in Mice

• Downloaded 1,084 times
• Download rankings, all-time:
  • Site-wide: 7,186 out of 70,077
  • In microbiology: 287 out of 5,685
• Year to date:
  • Site-wide: 63,894 out of 70,077
• Since beginning of last month:
  • Site-wide: 38,672 out of 70,077

Molecular basis of CTCF binding polarity in genome folding

• Downloaded 866 times
• Download rankings, all-time:
  • Site-wide: 10,269 out of 70,077
  • In molecular biology: 309 out of 2,257
• Year to date:
  • Site-wide: 313 out of 70,077
• Since beginning of last month:
  • Site-wide: 59 out of 70,077

Climate change will lead to pronounced shifts in the diversity of soil microbial communities

• Downloaded 857 times
• Download rankings, all-time:
  • Site-wide: 10,446 out of 70,077
  • In ecology: 244 out of 2,998
• Year to date:
  • Site-wide: 21,153 out of 70,077
• Since beginning of last month:
  • Site-wide: 34,237 out of 70,077

Coevolutionary analyses require phylogenetically deep alignments and better null models to accurately detect inter-protein contacts within and between species

• Downloaded 745 times
• Download rankings, all-time:
  • Site-wide: 12,884 out of 70,077
  • In evolutionary biology: 873 out of 4,602
• Year to date:
  • Site-wide: 21,910 out of 70,077
• Since beginning of last month:
  • Site-wide: 43,653 out of 70,077

A most wanted list of conserved protein families with no known domains

• Downloaded 722 times
• Download rankings, all-time:
  • Site-wide: 13,470 out of 70,077
  • In genomics: 1,827 out of 4,696
• Year to date:
  • Site-wide: 37,661 out of 70,077
• Since beginning of last month:
  • Site-wide: 19,051 out of 70,077

Automated and accurate estimation of gene family abundance from shotgun metagenomes

• Downloaded 721 times
• Download rankings, all-time:
  • Site-wide: 13,513 out of 70,077
  • In bioinformatics: 2,189 out of 6,876
• Year to date:
  • Site-wide: 52,569 out of 70,077
• Since beginning of last month:
  • Site-wide: 64,666 out of 70,077

Features of ChIP-seq data peak calling algorithms with good operating characteristics

• Downloaded 708 times
• Download rankings, all-time:
  • Site-wide: 13,859 out of 70,077
  • In bioinformatics: 2,236 out of 6,876
• Year to date:
  • Site-wide: 39,911 out of 70,077
• Since beginning of last month:
  • Site-wide: 59,140 out of 70,077

AlleleAnalyzer: a tool for personalized and allele-specific sgRNA design

• Downloaded 595 times
• Download rankings, all-time:
  • Site-wide: 17,787 out of 70,077
  • In bioinformatics: 2,699 out of 6,876
• Year to date:
  • Site-wide: 60,805 out of 70,077
• Since beginning of last month:
  • Site-wide: 19,022 out of 70,077

Unique Transcription Factor Functions Regulate Epigenetic and Transcriptional Dynamics During Cardiac Reprogramming

• Downloaded 476 times
• Download rankings, all-time:
  • Site-wide: 23,722 out of 70,077
  • In molecular biology: 699 out of 2,257
• Year to date:
  • Site-wide: 21,163 out of 70,077
• Since beginning of last month:
  • Site-wide: 7,863 out of 70,077

A Chromatin Accessibility Atlas of the Developing Human Telencephalon

• Downloaded 459 times
• Download rankings, all-time:
  • Site-wide: 24,796 out of 70,077
  • In neuroscience: 4,249 out of 12,597
• Year to date:
  • Site-wide: 1,263 out of 70,077
• Since beginning of last month:
  • Site-wide: 3,066 out of 70,077

Evolution of mechanisms that control mating in Drosophila males

• Downloaded 398 times
• Download rankings, all-time:
  • Site-wide: 29,079 out of 70,077
  • In neuroscience: 5,014 out of 12,597
• Year to date:
  • Site-wide: 66,347 out of 70,077
• Since beginning of last month:
  • Site-wide: 54,279 out of 70,077

phylogenize: correcting for phylogeny reveals genes associated with microbial distributions

• Downloaded 395 times
• Download rankings, all-time:
  • Site-wide: 29,351 out of 70,077
  • In bioinformatics: 3,857 out of 6,876
• Year to date:
  • Site-wide: 16,180 out of 70,077
• Since beginning of last month:
  • Site-wide: 22,511 out of 70,077

Bat Accelerated Regions Identify a Bat Forelimb Specific Enhancer in the HoxD Locus

• Downloaded 382 times
• Download rankings, all-time:
  • Site-wide: 30,439 out of 70,077
  • In evolutionary biology: 2,267 out of 4,602
• Year to date:
  • Site-wide: 45,340 out of 70,077
• Since beginning of last month:
  • Site-wide: 66,507 out of 70,077

Semi-supervised identification of cell populations in single-cell ATAC-seq

• Downloaded 380 times
• Download rankings, all-time:
  • Site-wide: 30,621 out of 70,077
  • In bioinformatics: 3,972 out of 6,876
• Year to date:
  • Site-wide: 1,567 out of 70,077
• Since beginning of last month:
  • Site-wide: 3,963 out of 70,077

The Epstein-Barr virus episome maneuvers between nuclear chromatin compartments during reactivation

• Downloaded 364 times
• Download rankings, all-time:
  • Site-wide: 32,040 out of 70,077
  • In microbiology: 1,981 out of 5,685
• Year to date:
  • Site-wide: 23,879 out of 70,077
• Since beginning of last month:
  • Site-wide: 30,749 out of 70,077

Global ecotypes in the ubiquitous marine clade SAR86

• Downloaded 354 times
• Download rankings, all-time:
  • Site-wide: 32,938 out of 70,077
  • In ecology: 1,017 out of 2,998
• Year to date:
  • Site-wide: 11,173 out of 70,077
• Since beginning of last month:
  • Site-wide: 30,996 out of 70,077

A Metagenomic Comparison of Tracheal Aspirate and Mini-Bronchial Alveolar Lavage for Assessment of Respiratory Microbiota

• Downloaded 340 times
• Download rankings, all-time:
  • Site-wide: 34,270 out of 70,077
  • In microbiology: 2,160 out of 5,685
• Year to date:
  • Site-wide: 17,157 out of 70,077
• Since beginning of last month:
  • Site-wide: 14,388 out of 70,077

A computational framework for detecting signatures of accelerated somatic evolution in cancer genomes

• Downloaded 335 times
• Download rankings, all-time:
  • Site-wide: 34,798 out of 70,077
  • In bioinformatics: 4,328 out of 6,876
• Year to date:
  • Site-wide: 37,115 out of 70,077
• Since beginning of last month:
  • Site-wide: 35,593 out of 70,077

The geometry of the distance-decay of similarity in ecological communities

• Downloaded 321 times
• Download rankings, all-time:
  • Site-wide: 36,194 out of 70,077
  • In ecology: 1,169 out of 2,998
• Year to date:
  • Site-wide: 53,179 out of 70,077
• Since beginning of last month:
  • Site-wide: 50,480 out of 70,077

Integrating Host Response and Unbiased Microbe Detection for Lower Respiratory Tract Infection Diagnosis in Critically Ill Adults

• Downloaded 316 times
• Download rankings, all-time:
  • Site-wide: 36,679 out of 70,077
  • In genomics: 3,395 out of 4,696
• Year to date:
  • Site-wide: 31,430 out of 70,077
• Since beginning of last month:
  • Site-wide: 44,896 out of 70,077

Longitudinal linked read sequencing reveals ecological and evolutionary responses of a human gut microbiome during antibiotic treatment

• Downloaded 300 times
• Download rankings, all-time:
  • Site-wide: 38,381 out of 70,077
  • In microbiology: 2,493 out of 5,685
• Year to date:
  • Site-wide: 583 out of 70,077
• Since beginning of last month:
  • Site-wide: 513 out of 70,077

Developmental loci harbor clusters of accelerated regions that evolved independently in ape lineages

• Downloaded 291 times
• Download rankings, all-time:
  • Site-wide: 39,290 out of 70,077
  • In evolutionary biology: 2,884 out of 4,602
• Year to date:
  • Site-wide: 34,624 out of 70,077
• Since beginning of last month:
  • Site-wide: 51,069 out of 70,077

Drug resistant gut bacteria mimic a host mechanism for anticancer drug clearance

• Downloaded 221 times
• Download rankings, all-time:
  • Site-wide: 48,164 out of 70,077
  • In microbiology: 3,367 out of 5,685
• Year to date:
  • Site-wide: 55,211 out of 70,077
• Since beginning of last month:
  • Site-wide: 8,601 out of 70,077