Author: Katherine S. Pollard

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Preprints

An atlas of lamina-associated chromatin across thirteen human cell types reveals cell-type-specific and multiple subtypes of peripheral heterochromatin

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Broad Host Range of SARS-CoV-2 Predicted by Comparative and Structural Analysis of ACE2 in Vertebrates

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Single cell epigenomic atlas of the developing human brain and organoids

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Evolutionary dynamics of bacteria in the gut microbiome within and across hosts

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American Gut: an Open Platform for Citizen-Science Microbiome Research

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A unified sequence catalogue of over 280,000 genomes obtained from the human gut microbiome

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An integrated metagenomics pipeline for strain profiling reveals novel patterns of transmission and global biogeography of bacteria

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Predicting 3D genome folding from DNA sequence

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Transcription Factors Recognize DNA Shape Without Nucleotide Recognition

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Chromatin features constrain structural variation across evolutionary timescales

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Massively parallel dissection of human accelerated regions in human and chimpanzee neural progenitors

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Principles of Meiotic Chromosome Assembly

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Average genome size estimation enables accurate quantification of gene family abundance and sheds light on the functional ecology of the human microbiome

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A high-resolution, chromosome-assigned Komodo dragon genome reveals adaptations in the cardiovascular, muscular, and chemosensory systems of monitor lizards

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Molecular basis of CTCF binding polarity in genome folding

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Phylogeny-corrected identification of microbial gene families relevant to human gut colonization

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Topical Silver Diamine Fluoride For Dental Caries Arrest In Preschool Children: A Randomized Controlled Trial

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Proteobacteria drive significant functional variability in the human gut microbiome

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Most regulatory interactions are not in linkage disequilibrium

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Protein binding and methylation on looping chromatin accurately predict distal regulatory interactions

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Development of Inflammatory Bowel Disease is Linked to a Longitudinal Restructuring of the Gut Metagenome in Mice

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Genomic analyses for age at menarche identify 389 independent signals and indicate BMI-independent effects of puberty timing on cancer susceptibility

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Climate change will lead to pronounced shifts in the diversity of soil microbial communities

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Coevolutionary analyses require phylogenetically deep alignments and better null models to accurately detect inter-protein contacts within and between species

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A Chromatin Accessibility Atlas of the Developing Human Telencephalon

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Automated and accurate estimation of gene family abundance from shotgun metagenomes

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A most wanted list of conserved protein families with no known domains

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Features of ChIP-seq data peak calling algorithms with good operating characteristics

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CellWalker integrates single-cell and bulk data to resolve regulatory elements across cell types in complex tissues

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Longitudinal linked read sequencing reveals ecological and evolutionary responses of a human gut microbiome during antibiotic treatment

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Unique Transcription Factor Functions Regulate Epigenetic and Transcriptional Dynamics During Cardiac Reprogramming

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AlleleAnalyzer: a tool for personalized and allele-specific sgRNA design

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Ultra-rapid metagenotyping of the human gut microbiome

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phylogenize: correcting for phylogeny reveals genes associated with microbial distributions

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A Metagenomic Comparison of Tracheal Aspirate and Mini-Bronchial Alveolar Lavage for Assessment of Respiratory Microbiota

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Drug resistant gut bacteria mimic a host mechanism for anticancer drug clearance

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A diet-dependent enzyme from the human gut microbiome promotes Th17 cell accumulation and colitis

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Global ecotypes in the ubiquitous marine clade SAR86

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The Epstein-Barr virus episome maneuvers between nuclear chromatin compartments during reactivation

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Evolution of mechanisms that control mating in Drosophila males

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Bat Accelerated Regions Identify a Bat Forelimb Specific Enhancer in the HoxD Locus

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Integrating Host Response and Unbiased Microbe Detection for Lower Respiratory Tract Infection Diagnosis in Critically Ill Adults

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A computational framework for detecting signatures of accelerated somatic evolution in cancer genomes

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The geometry of the distance-decay of similarity in ecological communities

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Developmental loci harbor clusters of accelerated regions that evolved independently in ape lineages

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Accurate and sensitive detection of microbial eukaryotes from metagenomic shotgun sequencing data

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A Transcriptional Switch Governing Fibroblast Plasticity Underlies Reversibility of Chronic Heart Disease

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