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Author: Sylvain Brisse

Rankings

  • All-time downloads: 14,803 (rank: 16,611 )
  • Categories:
    • bioinformatics: 349 (rank: 36,416 (tie) )
    • ecology: 209 (rank: 21,106 (tie) )
    • epidemiology: 212 (rank: 31,956 (tie) )
    • evolutionary biology: 366 (rank: 20,425 (tie) )
    • genetics: 203 (rank: 42,576 (tie) )
    • genomics: 2,965 (rank: 9,342 (tie) )
    • health policy: 331 (rank: 1,501 (tie) )
    • infectious diseases: 960 (rank: 30,394 (tie) )
    • microbiology: 9,208 (rank: 1,919 )

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Preprints

High prevalence of Klebsiella pneumoniae in European food products: a multicentric study comparing culture and molecular detection methods

microbiology more details view paper

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Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations

microbiology more details view paper
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    • Site-wide: 8,019
    • In microbiology: 478
  • Year to date:
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Identification of Klebsiella pneumoniae complex members using MALDI-TOF mass spectrometry

microbiology more details view paper
  • Downloaded 1,119 times
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    • Site-wide: 23,983
    • In microbiology: 1,396
  • Year to date:
    • Site-wide: 74,852
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Genomic epidemiology and global diversity of the emerging bacterial pathogen Elizabethkingia anophelis

microbiology more details view paper
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    • In microbiology: 1,657
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Population genomics of hypervirulent Klebsiella pneumoniae clonal group 23 reveals early emergence and rapid global dissemination

genomics more details view paper
  • Downloaded 942 times
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    • Site-wide: 31,017
    • In genomics: 2,659
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Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae

genomics more details view paper
  • Downloaded 685 times
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    • Site-wide: 49,037
    • In genomics: 3,752
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One Health or Three? Transmission modelling of Klebsiella isolates reveals ecological barriers to transmission between humans, animals and the environment

microbiology more details view paper
  • Downloaded 683 times
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Epidemiological, clinical and genomic insights into the ongoing diphtheria outbreak in Yemen

infectious diseases more details view paper
  • Downloaded 652 times
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    • Site-wide: 52,377
    • In infectious diseases: 3,377
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Emergence and global spread of Listeria monocytogenes main clinical clonal complex

genomics more details view paper
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    • Site-wide: 52,500
    • In genomics: 3,951
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Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov.

microbiology more details view paper
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    • Site-wide: 60,649
    • In microbiology: 3,794
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    • Site-wide: 89,124
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    • Site-wide: 108,297

The speciation and hybridization history of the genus Salmonella

microbiology more details view paper
  • Downloaded 523 times
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    • Site-wide: 69,146
    • In microbiology: 4,453
  • Year to date:
    • Site-wide: 134,924
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Optimization and validation of a quadruplex real-time PCR assay for the diagnosis of diphtheria

microbiology more details view paper
  • Downloaded 515 times
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    • Site-wide: 70,440
    • In microbiology: 4,567
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    • Site-wide: 117,385
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    • Site-wide: 125,745

Population genomics and antimicrobial resistance in Corynebacterium diphtheriae

microbiology more details view paper
  • Downloaded 471 times
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    • Site-wide: 77,919
    • In microbiology: 5,147
  • Year to date:
    • Site-wide: 95,594
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Rapid Genomic Characterization and Global Surveillance of Klebsiella Using Pathogenwatch

genomics more details view paper
  • Downloaded 377 times
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    • Site-wide: 97,189
    • In genomics: 5,960
  • Year to date:
    • Site-wide: 24,340
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    • Site-wide: 16,254

Gene composition as a potential barrier to large recombinations in the bacterial pathogen Klebsiella pneumoniae

evolutionary biology more details view paper
  • Downloaded 366 times
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    • Site-wide: 99,578
    • In evolutionary biology: 4,988
  • Year to date:
    • Site-wide: 162,315
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    • Site-wide: 163,350

Klebsiella MALDI TypeR: a web-based tool for Klebsiella identification based on MALDI-TOF mass spectrometry

bioinformatics more details view paper
  • Downloaded 349 times
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    • Site-wide: 103,717
    • In bioinformatics: 8,798
  • Year to date:
    • Site-wide: 62,198
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    • Site-wide: 76,976

A dual barcoding approach to bacterial strain nomenclature: Genomic taxonomy of Klebsiella pneumoniae strains

microbiology more details view paper
  • Downloaded 334 times
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    • Site-wide: 107,323
    • In microbiology: 7,524
  • Year to date:
    • Site-wide: 29,037
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    • Site-wide: 73,867

Determining factors for pertussis vaccination policy: A study in 5 EU countries

health policy more details view paper
  • Downloaded 331 times
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    • Site-wide: 108,125
    • In health policy: 273
  • Year to date:
    • Site-wide: 106,462
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    • Site-wide: 123,863

Genomic evolution of the globally disseminated multidrug-resistant Klebsiella pneumoniae clonal group 147

genomics more details view paper
  • Downloaded 310 times
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    • Site-wide: 113,378
    • In genomics: 6,506
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    • Site-wide: 32,261
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Gastrointestinal carriage of Klebsiella pneumoniae in a general adult population in Norway: a cross-sectional study of risk factors and bacterial genomic diversity

infectious diseases more details view paper
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    • Site-wide: 114,028
    • In infectious diseases: 5,059
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    • Site-wide: 32,690
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    • Site-wide: 62,660

Description of Klebsiella spallanzanii sp. nov. and of Klebsiella pasteurii sp. nov.

microbiology more details view paper
  • Downloaded 285 times
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    • Site-wide: 119,874
    • In microbiology: 8,613
  • Year to date:
    • Site-wide: 153,893
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    • Site-wide: 136,129

Description of Corynebacterium rouxii sp. nov., a novel member of the diphtheriae species complex

microbiology more details view paper
  • Downloaded 268 times
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    • Site-wide: 124,593
    • In microbiology: 9,016
  • Year to date:
    • Site-wide: 137,989
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    • Site-wide: 128,666

Outbreak of invasive wound mucormycosis in a burn unit due to multiple strains of Mucor circinelloides f. circinelloides resolved by whole genome sequencing

microbiology more details view paper
  • Downloaded 267 times
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    • Site-wide: 124,735
    • In microbiology: 9,023
  • Year to date:
    • Site-wide: 152,197
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    • Site-wide: 148,263

The ZKIR Assay, a novel Real-Time PCR Method for the Detection of Klebsiella pneumoniae and Closely Related Species in Environmental Samples

microbiology more details view paper
  • Downloaded 239 times
  • Download rankings, all-time:
    • Site-wide: 132,010
    • In microbiology: 9,648
  • Year to date:
    • Site-wide: 160,207
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    • Site-wide: 164,182

Carriage of a single strain of non-toxigenic Corynebacterium diphtheriae biovar Belfanti (Corynebacterium belfantii) in four patients with cystic fibrosis

microbiology more details view paper
  • Downloaded 218 times
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    • Site-wide: 137,492
    • In microbiology: 10,161
  • Year to date:
    • Site-wide: 161,673
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    • Site-wide: 157,562

Association between the COVID-19 pandemic and pertussis in France using multiple nationwide data sources

epidemiology more details view paper
  • Downloaded 212 times
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    • Site-wide: 139,049
    • In epidemiology: 5,783
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    • Site-wide: 53,571
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Leakiness at the human-animal interface in Southeast Asia and implications for the spread of antibiotic resistance

ecology more details view paper
  • Downloaded 209 times
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    • Site-wide: 139,789
    • In ecology: 4,703
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    • Site-wide: 54,488
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Spatial dynamics and vaccine-induced fitness changes of Bordetella pertussis

genetics more details view paper
  • Downloaded 203 times
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    • Site-wide: 141,213
    • In genetics: 5,584
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    • Site-wide: 56,489
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    • Site-wide: 4,796

Genomic epidemiology and strain taxonomy of Corynebacterium diphtheriae

microbiology more details view paper
  • Downloaded 168 times
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    • Site-wide: 148,932
    • In microbiology: 11,209
  • Year to date:
    • Site-wide: 70,277
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A curated collection of Klebsiella metabolic models reveals variable substrate usage and gene essentiality

microbiology more details view paper
  • Downloaded 154 times
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    • Site-wide: 151,799
    • In microbiology: 11,500
  • Year to date:
    • Site-wide: 77,008
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Transmission of Klebsiella strains and plasmids within and between Grey-headed flying fox colonies

microbiology more details view paper
  • Downloaded 69 times
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    • Site-wide: 162,588
    • In microbiology: 12,541
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