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Author: Jeremy Schmutz

Rankings

  • All-time downloads: 21,812 (rank: 8,876 )
  • Categories:
    • bioinformatics: 524 (rank: 26,222 (tie) )
    • evolutionary biology: 5,517 (rank: 547 )
    • genomics: 6,853 (rank: 3,321 (tie) )
    • microbiology: 65 (rank: 64,241 (tie) )
    • plant biology: 8,853 (rank: 92 )

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Preprints

The Aquilegia genome: adaptive radiation and an extraordinarily polymorphic chromosome with a unique history

evolutionary biology more details view paper
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The Sorghum bicolor reference genome: improved assembly and annotations, a transcriptome atlas, and signatures of genome organization

plant biology more details view paper
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    • Site-wide: 8,705
    • In plant biology: 77
  • Year to date:
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Widespread natural variation of DNA methylation within angiosperms

plant biology more details view paper
  • Downloaded 1,754 times
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    • Site-wide: 10,355
    • In plant biology: 99
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On the Origin and Evolutionary Consequences of Gene Body DNA Methylation

plant biology more details view paper
  • Downloaded 1,660 times
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Soybean Haplotype Map (GmHapMap): A Universal Resource for Soybean Translational and Functional Genomics

plant biology more details view paper
  • Downloaded 1,561 times
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Long-read genome sequencing for the diagnosis of neurodevelopmental disorders

genomics more details view paper
  • Downloaded 1,303 times
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    • Site-wide: 16,102
    • In genomics: 1,613
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Adaptation to heavy-metal contaminated environments proceeds via selection on pre-existing genetic variation

evolutionary biology more details view paper
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    • Site-wide: 17,958
    • In evolutionary biology: 655
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The Setaria viridis genome and diversity panel enables discovery of a novel domestication gene

genomics more details view paper
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    • Site-wide: 19,590
    • In genomics: 1,909
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The Sequence of 1504 Mutants in the Model Rice Variety Kitaake Facilitates Rapid Functional Genomic Studies

plant biology more details view paper
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Assembly of a young vertebrate Y chromosome reveals convergent signatures of sex chromosome evolution

evolutionary biology more details view paper
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    • Site-wide: 24,063
    • In evolutionary biology: 1,020
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    • Site-wide: 64,137
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The Ceratodon purpureus genome uncovers structurally complex, gene rich sex chromosomes

evolutionary biology more details view paper
  • Downloaded 869 times
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    • Site-wide: 29,059
    • In evolutionary biology: 1,291
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    • Site-wide: 10,433
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    • Site-wide: 10,577

The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes

genomics more details view paper
  • Downloaded 825 times
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    • Site-wide: 31,226
    • In genomics: 2,761
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    • Site-wide: 126,385
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The somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa

genomics more details view paper
  • Downloaded 667 times
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    • Site-wide: 41,796
    • In genomics: 3,394
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An Improved Genome Assembly of the European Aspen Populus tremula

genomics more details view paper
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    • In genomics: 3,724
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Genomic selection analyses reveal tradeoff between chestnut blight tolerance and genome inheritance from American chestnut (Castanea dentata) in (C. dentata x C. mollissima) x C. dentata backcross populations

genomics more details view paper
  • Downloaded 578 times
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    • Site-wide: 50,051
    • In genomics: 3,869
  • Year to date:
    • Site-wide: 77,194
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Pleiotropic and Epistatic Network-Based Discovery: Integrated Networks for Target Gene Discovery

bioinformatics more details view paper
  • Downloaded 524 times
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    • Site-wide: 56,348
    • In bioinformatics: 5,668
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    • Site-wide: 120,497
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    • Site-wide: 133,726

A Willow Sex Chromosome Reveals Convergent Evolution of Complex Palindromic Repeats

genomics more details view paper
  • Downloaded 455 times
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    • Site-wide: 65,918
    • In genomics: 4,670
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    • Site-wide: 108,222
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    • Site-wide: 115,703

The genetic architecture of shoot and root trait divergence between upland and lowland ecotypes of a perennial grass.

plant biology more details view paper
  • Downloaded 421 times
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    • Site-wide: 71,291
    • In plant biology: 1,840
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The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible

genomics more details view paper
  • Downloaded 415 times
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    • Site-wide: 72,452
    • In genomics: 4,955
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Genome sequence of the model rice variety KitaakeX

genomics more details view paper
  • Downloaded 399 times
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    • Site-wide: 75,117
    • In genomics: 5,078
  • Year to date:
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Genetic Associations in Four Decades of Multi-Environment Trials Reveal Agronomic Trait Evolution in Common Bean

genomics more details view paper
  • Downloaded 359 times
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    • Site-wide: 82,624
    • In genomics: 5,405
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    • Site-wide: 113,856
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    • Site-wide: 131,710

Sphagnum peat moss thermotolerance is modulated by the microbiome

plant biology more details view paper
  • Downloaded 239 times
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    • Site-wide: 109,482
    • In plant biology: 2,996
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    • Site-wide: 50,645
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The recent evolutionary rescue of a staple crop depended on over half a century of global germplasm exchange

evolutionary biology more details view paper
  • Downloaded 195 times
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    • Site-wide: 120,358
    • In evolutionary biology: 6,073
  • Year to date:
    • Site-wide: 27,437
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Hybridization history and repetitive element content in the genome of a homoploid hybrid, Yucca gloriosa (Asparagaceae)

plant biology more details view paper
  • Downloaded 185 times
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    • Site-wide: 122,689
    • In plant biology: 3,412
  • Year to date:
    • Site-wide: 132,273
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    • Site-wide: 91,133

Novel insights into joint estimations of demography, mutation rate, and selection using UV sex chromosomes

evolutionary biology more details view paper
  • Downloaded 144 times
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    • Site-wide: 131,988
    • In evolutionary biology: 6,563
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    • Site-wide: 38,984
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Integrative genomics reveals paths to sex dimorphism in Salix purpurea L.

genomics more details view paper
  • Downloaded 108 times
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    • Site-wide: 139,470
    • In genomics: 7,248
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The transcription factor Roc1 is a regulator of cellulose degradation in the wood-decaying mushroom Schizophyllum commune

microbiology more details view paper
  • Downloaded 65 times
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    • Site-wide: 145,738
    • In microbiology: 11,266
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