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Author: Jeremy Schmutz

Rankings

  • All-time downloads: 20,793 (rank: 8,487 )
  • Categories:
    • bioinformatics: 514 (rank: 25,084 (tie) )
    • evolutionary biology: 5,081 (rank: 583 )
    • genomics: 6,511 (rank: 3,306 )
    • plant biology: 8,687 (rank: 85 )

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Preprints

The recent evolutionary rescue of a staple crop depended on over half a century of global germplasm exchange

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The Aquilegia genome: adaptive radiation and an extraordinarily polymorphic chromosome with a unique history

evolutionary biology more details view paper
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    • Site-wide: 7,419
    • In evolutionary biology: 205
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The Sorghum bicolor reference genome: improved assembly and annotations, a transcriptome atlas, and signatures of genome organization

plant biology more details view paper
  • Downloaded 1,924 times
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    • Site-wide: 8,224
    • In plant biology: 78
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    • Site-wide: 60,570
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Widespread natural variation of DNA methylation within angiosperms

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  • Downloaded 1,745 times
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    • Site-wide: 9,557
    • In plant biology: 89
  • Year to date:
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On the Origin and Evolutionary Consequences of Gene Body DNA Methylation

plant biology more details view paper
  • Downloaded 1,650 times
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    • Site-wide: 10,348
    • In plant biology: 103
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Soybean Haplotype Map (GmHapMap): A Universal Resource for Soybean Translational and Functional Genomics

plant biology more details view paper
  • Downloaded 1,540 times
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    • Site-wide: 11,446
    • In plant biology: 119
  • Year to date:
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Adaptation to heavy-metal contaminated environments proceeds via selection on pre-existing genetic variation

evolutionary biology more details view paper
  • Downloaded 1,195 times
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    • Site-wide: 16,772
    • In evolutionary biology: 638
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    • Site-wide: 75,897
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Long-read genome sequencing for the diagnosis of neurodevelopmental disorders

genomics more details view paper
  • Downloaded 1,165 times
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    • In genomics: 1,780
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The Setaria viridis genome and diversity panel enables discovery of a novel domestication gene

genomics more details view paper
  • Downloaded 1,103 times
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    • Site-wide: 18,873
    • In genomics: 1,889
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The Sequence of 1504 Mutants in the Model Rice Variety Kitaake Facilitates Rapid Functional Genomic Studies

plant biology more details view paper
  • Downloaded 1,048 times
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    • Site-wide: 20,347
    • In plant biology: 310
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    • Site-wide: 87,107
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Assembly of a young vertebrate Y chromosome reveals convergent signatures of sex chromosome evolution

evolutionary biology more details view paper
  • Downloaded 972 times
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    • Site-wide: 22,674
    • In evolutionary biology: 990
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The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes

genomics more details view paper
  • Downloaded 813 times
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    • Site-wide: 29,253
    • In genomics: 2,673
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The Ceratodon purpureus genome uncovers structurally complex, gene rich sex chromosomes

evolutionary biology more details view paper
  • Downloaded 737 times
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    • Site-wide: 33,516
    • In evolutionary biology: 1,629
  • Year to date:
    • Site-wide: 10,472
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The somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa

genomics more details view paper
  • Downloaded 653 times
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    • Site-wide: 39,450
    • In genomics: 3,286
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Genomic selection analyses reveal tradeoff between chestnut blight tolerance and genome inheritance from American chestnut (Castanea dentata) in (C. dentata x C. mollissima) x C. dentata backcross populations

genomics more details view paper
  • Downloaded 551 times
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    • Site-wide: 48,836
    • In genomics: 3,839
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    • Site-wide: 75,766
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    • Site-wide: 62,107

An Improved Genome Assembly of the European Aspen Populus tremula

genomics more details view paper
  • Downloaded 551 times
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    • Site-wide: 48,860
    • In genomics: 3,842
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    • Site-wide: 37,019
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Pleiotropic and Epistatic Network-Based Discovery: Integrated Networks for Target Gene Discovery

bioinformatics more details view paper
  • Downloaded 514 times
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    • Site-wide: 53,007
    • In bioinformatics: 5,406
  • Year to date:
    • Site-wide: 108,153
  • Since beginning of last month:
    • Site-wide: 108,315

A Willow Sex Chromosome Reveals Convergent Evolution of Complex Palindromic Repeats

genomics more details view paper
  • Downloaded 445 times
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    • Site-wide: 62,022
    • In genomics: 4,501
  • Year to date:
    • Site-wide: 92,866
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    • Site-wide: 106,481

The genetic architecture of shoot and root trait divergence between upland and lowland ecotypes of a perennial grass.

plant biology more details view paper
  • Downloaded 412 times
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    • Site-wide: 67,193
    • In plant biology: 1,729
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    • Site-wide: 89,437
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The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible

genomics more details view paper
  • Downloaded 394 times
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    • Site-wide: 70,244
    • In genomics: 4,868
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    • Site-wide: 24,294
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Genome sequence of the model rice variety KitaakeX

genomics more details view paper
  • Downloaded 393 times
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    • Site-wide: 70,410
    • In genomics: 4,879
  • Year to date:
    • Site-wide: 126,621
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Genetic Associations in Four Decades of Multi-Environment Trials Reveal Agronomic Trait Evolution in Common Bean

genomics more details view paper
  • Downloaded 351 times
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    • Site-wide: 77,885
    • In genomics: 5,198
  • Year to date:
    • Site-wide: 96,282
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    • Site-wide: 69,829

Sphagnum peat moss thermotolerance is modulated by the microbiome

plant biology more details view paper
  • Downloaded 193 times
  • Download rankings, all-time:
    • Site-wide: 112,124
    • In plant biology: 3,104
  • Year to date:
    • Site-wide: 51,726
  • Since beginning of last month:
    • Site-wide: 54,444

Hybridization history and repetitive element content in the genome of a homoploid hybrid, Yucca gloriosa (Asparagaceae)

plant biology more details view paper
  • Downloaded 175 times
  • Download rankings, all-time:
    • Site-wide: 116,161
    • In plant biology: 3,233
  • Year to date:
    • Site-wide: 125,015
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    • Site-wide: 121,725

Novel insights into joint estimations of demography, mutation rate, and selection using UV sex chromosomes

evolutionary biology more details view paper
  • Downloaded 115 times
  • Download rankings, all-time:
    • Site-wide: 128,634
    • In evolutionary biology: 6,490
  • Year to date:
    • Site-wide: 30,332
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    • Site-wide: 7,175

Integrative genomics reveals paths to sex dimorphism in Salix purpurea L.

genomics more details view paper
  • Downloaded 92 times
  • Download rankings, all-time:
    • Site-wide: 132,761
    • In genomics: 6,976
  • Year to date:
    • Site-wide: 38,083
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