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Author: Jeremy Schmutz

Rankings

  • All-time downloads: 23,424 (rank: 9,267 (tie) )
  • Categories:
    • bioinformatics: 548 (rank: 27,377 (tie) )
    • evolutionary biology: 6,181 (rank: 501 )
    • genomics: 7,278 (rank: 3,289 (tie) )
    • microbiology: 117 (rank: 65,745 (tie) )
    • plant biology: 9,300 (rank: 92 )

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Preprints

Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs

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The Aquilegia genome: adaptive radiation and an extraordinarily polymorphic chromosome with a unique history

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The Sorghum bicolor reference genome: improved assembly and annotations, a transcriptome atlas, and signatures of genome organization

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    • Site-wide: 9,378
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Widespread natural variation of DNA methylation within angiosperms

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On the Origin and Evolutionary Consequences of Gene Body DNA Methylation

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  • Downloaded 1,674 times
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Soybean Haplotype Map (GmHapMap): A Universal Resource for Soybean Translational and Functional Genomics

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Long-read genome sequencing for the diagnosis of neurodevelopmental disorders

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  • Downloaded 1,375 times
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Adaptation to heavy-metal contaminated environments proceeds via selection on pre-existing genetic variation

evolutionary biology more details view paper
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    • In evolutionary biology: 673
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The Setaria viridis genome and diversity panel enables discovery of a novel domestication gene

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The Sequence of 1504 Mutants in the Model Rice Variety Kitaake Facilitates Rapid Functional Genomic Studies

plant biology more details view paper
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Assembly of a young vertebrate Y chromosome reveals convergent signatures of sex chromosome evolution

evolutionary biology more details view paper
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    • In evolutionary biology: 1,020
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The Ceratodon purpureus genome uncovers structurally complex, gene rich sex chromosomes

evolutionary biology more details view paper
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    • In evolutionary biology: 1,113
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The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes

genomics more details view paper
  • Downloaded 849 times
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The somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa

genomics more details view paper
  • Downloaded 698 times
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    • Site-wide: 43,976
    • In genomics: 3,477
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An Improved Genome Assembly of the European Aspen Populus tremula

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Genomic selection analyses reveal tradeoff between chestnut blight tolerance and genome inheritance from American chestnut (Castanea dentata) in (C. dentata x C. mollissima) x C. dentata backcross populations

genomics more details view paper
  • Downloaded 622 times
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    • Site-wide: 51,231
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Pleiotropic and Epistatic Network-Based Discovery: Integrated Networks for Target Gene Discovery

bioinformatics more details view paper
  • Downloaded 548 times
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    • Site-wide: 59,886
    • In bioinformatics: 5,896
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    • Site-wide: 126,512
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A Willow Sex Chromosome Reveals Convergent Evolution of Complex Palindromic Repeats

genomics more details view paper
  • Downloaded 469 times
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    • Site-wide: 71,562
    • In genomics: 4,920
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The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible

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  • Downloaded 456 times
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    • Site-wide: 73,693
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The genetic architecture of shoot and root trait divergence between upland and lowland ecotypes of a perennial grass.

plant biology more details view paper
  • Downloaded 445 times
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    • Site-wide: 75,609
    • In plant biology: 1,926
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Genome sequence of the model rice variety KitaakeX

genomics more details view paper
  • Downloaded 414 times
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    • In genomics: 5,347
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Genetic Associations in Four Decades of Multi-Environment Trials Reveal Agronomic Trait Evolution in Common Bean

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  • Downloaded 377 times
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    • Site-wide: 88,726
    • In genomics: 5,657
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Within-Arctic horizontal gene transfer as a driver of convergent evolution in distantly related microalgae

evolutionary biology more details view paper
  • Downloaded 293 times
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    • In evolutionary biology: 5,421
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Sphagnum peat moss thermotolerance is modulated by the microbiome

plant biology more details view paper
  • Downloaded 281 times
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    • Site-wide: 111,326
    • In plant biology: 3,007
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The recent evolutionary rescue of a staple crop depended on over half a century of global germplasm exchange

evolutionary biology more details view paper
  • Downloaded 257 times
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    • Site-wide: 117,710
    • In evolutionary biology: 5,827
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Hybridization history and repetitive element content in the genome of a homoploid hybrid, Yucca gloriosa (Asparagaceae)

plant biology more details view paper
  • Downloaded 202 times
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    • Site-wide: 131,860
    • In plant biology: 3,673
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Novel insights into joint estimations of demography, mutation rate, and selection using UV sex chromosomes

evolutionary biology more details view paper
  • Downloaded 181 times
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    • Site-wide: 136,971
    • In evolutionary biology: 6,663
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Integrative genomics reveals paths to sex dimorphism in Salix purpurea L.

genomics more details view paper
  • Downloaded 145 times
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    • In genomics: 7,476
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The genome of stress tolerant crop wild relativePaspalum vaginatum leads to increased biomassproductivity in the crop Zea mays

plant biology more details view paper
  • Downloaded 134 times
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    • In plant biology: 4,140
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Multiplex knockout of trichome-regulating MYBs in poplar affects light sensitivity and triterpene accumulation

plant biology more details view paper
  • Downloaded 118 times
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    • In plant biology: 4,218
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The transcription factor Roc1 is a regulator of cellulose degradation in the wood-decaying mushroom Schizophyllum commune

microbiology more details view paper
  • Downloaded 117 times
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    • Site-wide: 150,650
    • In microbiology: 11,478
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