Author: Rasmus Nielsen

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Preprints

Population genomics of the Viking world

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  • Site-wide: 353
  • In genetics: 9
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  • Site-wide: 1,672

The population history of northeastern Siberia since the Pleistocene

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  • Site-wide: 1,095
  • In genomics: 112
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  • Site-wide: 11,356

The Genetic Cost of Neanderthal Introgression

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  • Site-wide: 2,180
  • In evolutionary biology: 36
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Synonymous mutations and the molecular evolution of SARS-Cov-2 origins

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  • Site-wide: 2,730
  • In evolutionary biology: 50
• Year to date:
  • Site-wide: 5,186
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  • Site-wide: 4,487

Archaic adaptive introgression in TBX15/WARS2

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  • Site-wide: 5,655
  • In evolutionary biology: 155
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  • Site-wide: 27,183
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  • Site-wide: 30,131

An approximate full-likelihood method for inferring selection and allele frequency trajectories from DNA sequence data

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  • Site-wide: 5,940
  • In genetics: 300
• Year to date:
  • Site-wide: 28,428
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  • Site-wide: 51,166

Massive haplotypes underlie ecotypic differentiation in sunflowers

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  • Site-wide: 6,733
  • In evolutionary biology: 206
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  • Site-wide: 14,492
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  • Site-wide: 22,170

Ohana: detecting selection in multiple populations by modelling ancestral admixture components

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  • Site-wide: 6,748
  • In bioinformatics: 850
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  • Site-wide: None
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  • Site-wide: 70,863

A map of climate change-driven natural selection in Arabidopsis thaliana

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  • Site-wide: 8,824
  • In evolutionary biology: 294
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  • Site-wide: 71,477

Disentangling selection on genetically correlated polygenic traits using whole-genome genealogies

• Downloaded 1,593 times
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  • Site-wide: 9,017
  • In genetics: 469
• Year to date:
  • Site-wide: 1,384
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  • Site-wide: 8,271

Assessing uncertainty in the rooting of the SARS-CoV-2 phylogeny

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  • Site-wide: 9,440
  • In evolutionary biology: 325
• Year to date:
  • Site-wide: 5,086
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  • Site-wide: 2,508

Ohana, a tool set for population genetic analyses of admixture components

• Downloaded 1,465 times
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  • Site-wide: 10,192
  • In bioinformatics: 1,295
• Year to date:
  • Site-wide: 2,008
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  • Site-wide: 73,749

VolcanoFinder: genomic scans for adaptive introgression

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  • Site-wide: 10,597
  • In evolutionary biology: 380
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  • Site-wide: 88,836

Fitting the Balding-Nichols model to forensic databases

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  • Site-wide: 12,047
  • In genetics: 626
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  • Site-wide: 15,314
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  • Site-wide: 9,375

No statistical evidence for an effect of CCR5-∆32 on lifespan in the UK Biobank cohort

• Downloaded 1,168 times
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  • Site-wide: 14,341
  • In genetics: 754
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  • Site-wide: 36,537
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  • Site-wide: 20,915

The origin and evolution of maize in the American Southwest

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  • Site-wide: 15,595
  • In evolutionary biology: 643
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  • Site-wide: 38,957
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  • Site-wide: 48,079

Understanding Admixture Fractions

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  • Site-wide: 15,734
  • In evolutionary biology: 652
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  • Site-wide: None
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  • Site-wide: 115,862

The genetic architecture of sporadic and recurrent miscarriage

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  • Site-wide: 15,965
  • In genetics: 833
• Year to date:
  • Site-wide: 61,107
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  • Site-wide: 39,552

Divergence, gene flow and the origin of leapfrog geographic distributions: The history of color pattern variation in Phyllobates poison-dart frogs

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  • Site-wide: 17,467
  • In evolutionary biology: 759
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  • Site-wide: None
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  • Site-wide: 17,816

Selection on the FADS region in Europeans

• Downloaded 936 times
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  • Site-wide: 19,992
  • In genetics: 1,010
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  • Site-wide: None
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  • Site-wide: 95,272

Inferring the ancestry of parents and grandparents from genetic data

• Downloaded 898 times
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  • Site-wide: 21,179
  • In genetics: 1,073
• Year to date:
  • Site-wide: 8,184
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  • Site-wide: 11,935

Deviations from Hardy Weinberg Equilibrium at CCR5-Δ32 in Large Sequencing Data Sets?

• Downloaded 896 times
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  • Site-wide: 21,241
  • In evolutionary biology: 999
• Year to date:
  • Site-wide: 34,947
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  • Site-wide: 42,687

Estimating the timing of multiple admixture events using 3-locus Linkage Disequilibrium

• Downloaded 865 times
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  • Site-wide: 22,397
  • In bioinformatics: 2,723
• Year to date:
  • Site-wide: 57,236
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  • Site-wide: 58,821

On The Number Of Siblings And p-th Cousins In A Large Population Sample

• Downloaded 838 times
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  • Site-wide: 23,417
  • In evolutionary biology: 1,130
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  • Site-wide: None
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  • Site-wide: 63,365

Composite Likelihood Method for Inferring Local Pedigrees

• Downloaded 833 times
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  • Site-wide: 23,630
  • In genetics: 1,200
• Year to date:
  • Site-wide: 63,668
• Since beginning of last month:
  • Site-wide: 68,912

A hidden Markov model approach for simultaneously estimating local ancestry and admixture time using next generation sequence data in samples of arbitrary ploidy

• Downloaded 808 times
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  • Site-wide: 24,629
  • In evolutionary biology: 1,200
• Year to date:
  • Site-wide: None
• Since beginning of last month:
  • Site-wide: 105,087

Estimating the timing of multiple admixture pulses during local ancestry inference.

• Downloaded 763 times
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  • Site-wide: 26,640
  • In evolutionary biology: 1,334
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  • Site-wide: None
• Since beginning of last month:
  • Site-wide: 116,546

Non-additive polygenic models improve predictions of fitness traits in three eukaryote model species

• Downloaded 749 times
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  • Site-wide: 27,427
  • In evolutionary biology: 1,388
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  • Site-wide: None
• Since beginning of last month:
  • Site-wide: 46,102

Detecting recent selective sweeps while controlling for mutation rate and background selection

• Downloaded 749 times
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  • Site-wide: 27,385
  • In evolutionary biology: 1,387
• Year to date:
  • Site-wide: None
• Since beginning of last month:
  • Site-wide: 99,067

A population phylogenetic view of mitochondrial heteroplasmy

• Downloaded 746 times
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  • Site-wide: 27,565
  • In genomics: 2,600
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  • Site-wide: None
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  • Site-wide: 105,953

A likelihood method for estimating present-day human contamination in ancient DNA samples using low-depth haploid chromosome data

• Downloaded 628 times
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  • Site-wide: 34,724
  • In genomics: 3,056
• Year to date:
  • Site-wide: 30,484
• Since beginning of last month:
  • Site-wide: 94,006

On the distribution of tract lengths during adaptive introgression

• Downloaded 627 times
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  • Site-wide: 34,832
  • In genomics: 3,062
• Year to date:
  • Site-wide: 54,152
• Since beginning of last month:
  • Site-wide: 43,954

The history and evolution of the Denisovan-EPAS1 haplotype in Tibetans

• Downloaded 598 times
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  • Site-wide: 36,956
  • In evolutionary biology: 1,982
• Year to date:
  • Site-wide: None
• Since beginning of last month:
  • Site-wide: 23,160

Inferring Adaptive Introgression Using Hidden Markov Models

• Downloaded 558 times
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  • Site-wide: 40,277
  • In evolutionary biology: 2,227
• Year to date:
  • Site-wide: 7,370
• Since beginning of last month:
  • Site-wide: 10,561

The genomics of mimicry: gene expression throughout development provides insights into convergent and divergent phenotypes in a Müllerian mimicry system

• Downloaded 548 times
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  • Site-wide: 41,220
  • In evolutionary biology: 2,278
• Year to date:
  • Site-wide: 9,783
• Since beginning of last month:
  • Site-wide: 21,292

The distribution of waiting distances in ancestral recombination graphs and its applications

• Downloaded 540 times
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  • Site-wide: 42,053
  • In evolutionary biology: 2,322
• Year to date:
  • Site-wide: 579
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  • Site-wide: 540

Joint Estimation of Pedigrees and Effective Population Size Using Markov Chain Monte Carlo

• Downloaded 361 times
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  • Site-wide: 64,493
  • In genetics: 3,087
• Year to date:
  • Site-wide: 46,688
• Since beginning of last month:
  • Site-wide: 110,083

A Bayesian framework for inferring the influence of sequence context on single base modifications

• Downloaded 331 times
• Download rankings, all-time:
  • Site-wide: 69,621
  • In bioinformatics: 6,644
• Year to date:
  • Site-wide: 63,804
• Since beginning of last month:
  • Site-wide: 112,323

COAL_PHYRE: A Composite Likelihood Method for Estimating Species Tree Parameters from Genomic Data Using Coalescent Theory

• Downloaded 223 times
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  • Site-wide: 90,993
  • In evolutionary biology: 5,014
• Year to date:
  • Site-wide: 36,898
• Since beginning of last month:
  • Site-wide: 13,446

Inferring person-to-person networks of pathogen transmission: is routine surveillance data up to the task?

• Downloaded 206 times
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  • Site-wide: 94,497
  • In epidemiology: 3,790
• Year to date:
  • Site-wide: None
• Since beginning of last month:
  • Site-wide: 107,148

Convergent evolution of increased urine concentrating ability in desert mammals

• Downloaded 156 times
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  • Site-wide: 104,543
  • In evolutionary biology: 5,619
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  • Site-wide: None
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  • Site-wide: 54,021

Evolution of the genetic architecture of local adaptations under genetic rescue is determined by mutational load and polygenicity

• Downloaded 149 times
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  • Site-wide: 105,874
  • In genetics: 4,766
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  • Site-wide: 21,576

AncestralClust: Clustering of Divergent Nucleotide Sequences by Ancestral Sequence Reconstruction using Phylogenetic Trees

• Downloaded 67 times
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  • Site-wide: 119,483
  • In bioinformatics: 9,633
• Year to date:
  • Site-wide: 1,599
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  • Site-wide: None