Author: Rasmus Nielsen
- ORCiD: http://orcid.org/0000-0003-0513-6591
- Most recently observed institution: University of California, Berkeley
Rankings
- All-time downloads: 100,957 (rank: 1,997 )
- Categories:
- bioinformatics: 6,449 (rank: 2,237 )
- epidemiology: 868 (rank: 14,844 (tie) )
- evolutionary biology: 32,707 (rank: 48 )
- genetics: 35,319 (rank: 184 (tie) )
- genomics: 12,311 (rank: 1,808 )
Downloads per author, site-wide
Preprints
Estimating population split times and migration rates from historical effective population sizes
evolutionary biology more details view paperNo download data for this paper yet.
Population genomics of the Viking world
genetics more details view paper- Downloaded 21,453 times
- Download rankings, all-time:
- Site-wide: 497
- In genetics: 8
- Year to date:
- Site-wide: 1,012
- Since beginning of last month:
- Site-wide: 496
The population history of northeastern Siberia since the Pleistocene
genomics more details view paper- Downloaded 9,407 times
- Download rankings, all-time:
- Site-wide: 1,366
- In genomics: 90
- Year to date:
- Site-wide: 4,097
- Since beginning of last month:
- Site-wide: 3,324
Population Genomics of Stone Age Eurasia
evolutionary biology more details view paper- Downloaded 9,260 times
- Download rankings, all-time:
- Site-wide: 1,401
- In evolutionary biology: None
- Year to date:
- Site-wide: 101
- Since beginning of last month:
- Site-wide: 9
The Genetic Cost of Neanderthal Introgression
evolutionary biology more details view paper- Downloaded 4,412 times
- Download rankings, all-time:
- Site-wide: 3,756
- In evolutionary biology: 49
- Year to date:
- Site-wide: 105,511
- Since beginning of last month:
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Synonymous mutations and the molecular evolution of SARS-Cov-2 origins
evolutionary biology more details view paper- Downloaded 4,273 times
- Download rankings, all-time:
- Site-wide: 3,912
- In evolutionary biology: 53
- Year to date:
- Site-wide: 52,768
- Since beginning of last month:
- Site-wide: 61,354
The genetic architecture of phenotypic diversity in the betta fish (Betta splendens)
genetics more details view paper- Downloaded 3,196 times
- Download rankings, all-time:
- Site-wide: 5,965
- In genetics: 266
- Year to date:
- Site-wide: 3,539
- Since beginning of last month:
- Site-wide: 3,937
Ohana: detecting selection in multiple populations by modelling ancestral admixture components
bioinformatics more details view paper- Downloaded 2,619 times
- Download rankings, all-time:
- Site-wide: 7,980
- In bioinformatics: 759
- Year to date:
- Site-wide: 62,156
- Since beginning of last month:
- Site-wide: 52,106
Archaic adaptive introgression in TBX15/WARS2
evolutionary biology more details view paper- Downloaded 2,354 times
- Download rankings, all-time:
- Site-wide: 9,317
- In evolutionary biology: 208
- Year to date:
- Site-wide: 75,176
- Since beginning of last month:
- Site-wide: 41,021
An approximate full-likelihood method for inferring selection and allele frequency trajectories from DNA sequence data
genetics more details view paper- Downloaded 2,300 times
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- Site-wide: 9,648
- In genetics: 365
- Year to date:
- Site-wide: 75,082
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- Site-wide: 66,978
Massive haplotypes underlie ecotypic differentiation in sunflowers
evolutionary biology more details view paper- Downloaded 2,175 times
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- Site-wide: 10,450
- In evolutionary biology: 253
- Year to date:
- Site-wide: 92,044
- Since beginning of last month:
- Site-wide: 58,897
Assessing uncertainty in the rooting of the SARS-CoV-2 phylogeny
evolutionary biology more details view paper- Downloaded 2,136 times
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- Site-wide: 10,749
- In evolutionary biology: 278
- Year to date:
- Site-wide: 42,115
- Since beginning of last month:
- Site-wide: 33,148
Disentangling selection on genetically correlated polygenic traits using whole-genome genealogies
genetics more details view paper- Downloaded 1,954 times
- Download rankings, all-time:
- Site-wide: 12,320
- In genetics: 462
- Year to date:
- Site-wide: 113,822
- Since beginning of last month:
- Site-wide: 98,916
A map of climate change-driven natural selection in Arabidopsis thaliana
evolutionary biology more details view paper- Downloaded 1,875 times
- Download rankings, all-time:
- Site-wide: 13,073
- In evolutionary biology: 342
- Year to date:
- Site-wide: 77,991
- Since beginning of last month:
- Site-wide: 58,456
Ohana, a tool set for population genetic analyses of admixture components
bioinformatics more details view paper- Downloaded 1,613 times
- Download rankings, all-time:
- Site-wide: 16,336
- In bioinformatics: 1,680
- Year to date:
- Site-wide: 108,905
- Since beginning of last month:
- Site-wide: 124,395
Fitting the Balding-Nichols model to forensic databases
genetics more details view paper- Downloaded 1,595 times
- Download rankings, all-time:
- Site-wide: 16,660
- In genetics: 664
- Year to date:
- Site-wide: 70,842
- Since beginning of last month:
- Site-wide: 166,701
VolcanoFinder: genomic scans for adaptive introgression
evolutionary biology more details view paper- Downloaded 1,564 times
- Download rankings, all-time:
- Site-wide: 17,194
- In evolutionary biology: 487
- Year to date:
- Site-wide: 150,559
- Since beginning of last month:
- Site-wide: 186,586
Evaluation of methods for estimating coalescence times using ancestral recombination graphs
genomics more details view paper- Downloaded 1,491 times
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- Site-wide: 18,468
- In genomics: 2,521
- Year to date:
- Site-wide: 3,964
- Since beginning of last month:
- Site-wide: 20,871
Divergence, gene flow and the origin of leapfrog geographic distributions: The history of color pattern variation in Phyllobates poison-dart frogs
evolutionary biology more details view paper- Downloaded 1,417 times
- Download rankings, all-time:
- Site-wide: 20,006
- In evolutionary biology: 616
- Year to date:
- Site-wide: 94,477
- Since beginning of last month:
- Site-wide: 151,784
No statistical evidence for an effect of CCR5-∆32 on lifespan in the UK Biobank cohort
genetics more details view paper- Downloaded 1,337 times
- Download rankings, all-time:
- Site-wide: 21,876
- In genetics: 880
- Year to date:
- Site-wide: 113,434
- Since beginning of last month:
- Site-wide: 132,667
Inferring the ancestry of parents and grandparents from genetic data
genetics more details view paper- Downloaded 1,328 times
- Download rankings, all-time:
- Site-wide: 22,113
- In genetics: 921
- Year to date:
- Site-wide: 50,406
- Since beginning of last month:
- Site-wide: 51,975
The history and evolution of the Denisovan-EPAS1 haplotype in Tibetans
evolutionary biology more details view paper- Downloaded 1,320 times
- Download rankings, all-time:
- Site-wide: 22,314
- In evolutionary biology: 815
- Year to date:
- Site-wide: 37,125
- Since beginning of last month:
- Site-wide: 39,511
Understanding Admixture Fractions
evolutionary biology more details view paper- Downloaded 1,291 times
- Download rankings, all-time:
- Site-wide: 23,109
- In evolutionary biology: 769
- Year to date:
- Site-wide: 67,030
- Since beginning of last month:
- Site-wide: 58,782
The genetic architecture of sporadic and recurrent miscarriage
genetics more details view paper- Downloaded 1,273 times
- Download rankings, all-time:
- Site-wide: 23,623
- In genetics: 937
- Year to date:
- Site-wide: 122,170
- Since beginning of last month:
- Site-wide: 101,006
The origin and evolution of maize in the American Southwest
evolutionary biology more details view paper- Downloaded 1,260 times
- Download rankings, all-time:
- Site-wide: 24,006
- In evolutionary biology: 781
- Year to date:
- Site-wide: 102,725
- Since beginning of last month:
- Site-wide: 102,129
The distribution of waiting distances in ancestral recombination graphs and its applications
evolutionary biology more details view paper- Downloaded 1,157 times
- Download rankings, all-time:
- Site-wide: 27,395
- In evolutionary biology: 967
- Year to date:
- Site-wide: 106,844
- Since beginning of last month:
- Site-wide: 106,118
Estimating the timing of multiple admixture events using 3-locus Linkage Disequilibrium
bioinformatics more details view paper- Downloaded 1,152 times
- Download rankings, all-time:
- Site-wide: 27,582
- In bioinformatics: 2,856
- Year to date:
- Site-wide: 86,840
- Since beginning of last month:
- Site-wide: 168,285
Non-additive polygenic models improve predictions of fitness traits in three eukaryote model species
evolutionary biology more details view paper- Downloaded 1,132 times
- Download rankings, all-time:
- Site-wide: 28,308
- In evolutionary biology: 1,052
- Year to date:
- Site-wide: 77,792
- Since beginning of last month:
- Site-wide: 67,358
Deviations from Hardy Weinberg Equilibrium at CCR5-Δ32 in Large Sequencing Data Sets?
evolutionary biology more details view paper- Downloaded 1,126 times
- Download rankings, all-time:
- Site-wide: 28,549
- In evolutionary biology: 1,059
- Year to date:
- Site-wide: 79,254
- Since beginning of last month:
- Site-wide: 75,878
On The Number Of Siblings And p-th Cousins In A Large Population Sample
evolutionary biology more details view paper- Downloaded 1,043 times
- Download rankings, all-time:
- Site-wide: 31,995
- In evolutionary biology: 1,217
- Year to date:
- Site-wide: 88,762
- Since beginning of last month:
- Site-wide: 137,574
Selection on the FADS region in Europeans
genetics more details view paper- Downloaded 1,010 times
- Download rankings, all-time:
- Site-wide: 33,620
- In genetics: 1,326
- Year to date:
- Site-wide: 171,452
- Since beginning of last month:
- Site-wide: 139,094
Composite Likelihood Method for Inferring Local Pedigrees
genetics more details view paper- Downloaded 909 times
- Download rankings, all-time:
- Site-wide: 39,294
- In genetics: 1,538
- Year to date:
- Site-wide: 175,832
- Since beginning of last month:
- Site-wide: 139,154
A hidden Markov model approach for simultaneously estimating local ancestry and admixture time using next generation sequence data in samples of arbitrary ploidy
evolutionary biology more details view paper- Downloaded 894 times
- Download rankings, all-time:
- Site-wide: 40,250
- In evolutionary biology: 1,570
- Year to date:
- Site-wide: 149,525
- Since beginning of last month:
- Site-wide: 139,719
Detecting recent selective sweeps while controlling for mutation rate and background selection
evolutionary biology more details view paper- Downloaded 852 times
- Download rankings, all-time:
- Site-wide: 43,238
- In evolutionary biology: 1,758
- Year to date:
- Site-wide: 139,437
- Since beginning of last month:
- Site-wide: 111,120
Estimating the timing of multiple admixture pulses during local ancestry inference.
evolutionary biology more details view paper- Downloaded 852 times
- Download rankings, all-time:
- Site-wide: 43,248
- In evolutionary biology: 1,738
- Year to date:
- Site-wide: 149,598
- Since beginning of last month:
- Site-wide: 152,810
The genomics of mimicry: gene expression throughout development provides insights into convergent and divergent phenotypes in a Müllerian mimicry system
evolutionary biology more details view paper- Downloaded 852 times
- Download rankings, all-time:
- Site-wide: 43,242
- In evolutionary biology: 1,750
- Year to date:
- Site-wide: 121,935
- Since beginning of last month:
- Site-wide: 137,782
A likelihood method for estimating present-day human contamination in ancient DNA samples using low-depth haploid chromosome data
genomics more details view paper- Downloaded 835 times
- Download rankings, all-time:
- Site-wide: 44,569
- In genomics: 3,410
- Year to date:
- Site-wide: 72,340
- Since beginning of last month:
- Site-wide: 47,087
A population phylogenetic view of mitochondrial heteroplasmy
genomics more details view paper- Downloaded 823 times
- Download rankings, all-time:
- Site-wide: 45,494
- In genomics: 3,307
- Year to date:
- Site-wide: 171,631
- Since beginning of last month:
- Site-wide: 172,560
Inferring Adaptive Introgression Using Hidden Markov Models
evolutionary biology more details view paper- Downloaded 735 times
- Download rankings, all-time:
- Site-wide: 53,593
- In evolutionary biology: 2,270
- Year to date:
- Site-wide: 128,342
- Since beginning of last month:
- Site-wide: 161,886
AncestralClust: Clustering of Divergent Nucleotide Sequences by Ancestral Sequence Reconstruction using Phylogenetic Trees
bioinformatics more details view paper- Downloaded 714 times
- Download rankings, all-time:
- Site-wide: 55,815
- In bioinformatics: 5,924
- Year to date:
- Site-wide: 32,485
- Since beginning of last month:
- Site-wide: 26,230
On the distribution of tract lengths during adaptive introgression
genomics more details view paper- Downloaded 690 times
- Download rankings, all-time:
- Site-wide: 58,502
- In genomics: 3,975
- Year to date:
- Site-wide: 186,005
- Since beginning of last month:
- Site-wide: 180,786
Inferring person-to-person networks of Plasmodium falciparum transmission: is routine surveillance data up to the task?
epidemiology more details view paper- Downloaded 530 times
- Download rankings, all-time:
- Site-wide: 82,119
- In epidemiology: 3,892
- Year to date:
- Site-wide: 44,511
- Since beginning of last month:
- Site-wide: 19,506
Estimating the relative proportions of SARS-CoV-2 strains from wastewater samples
epidemiology more details view paper- Downloaded 520 times
- Download rankings, all-time:
- Site-wide: 84,006
- In epidemiology: 4,141
- Year to date:
- Site-wide: 4,777
- Since beginning of last month:
- Site-wide: 34,523
A Bayesian framework for inferring the influence of sequence context on single base modifications
bioinformatics more details view paper- Downloaded 411 times
- Download rankings, all-time:
- Site-wide: 107,827
- In bioinformatics: 8,552
- Year to date:
- Site-wide: 184,297
- Since beginning of last month:
- Site-wide: 155,787
Convergent evolution of increased urine concentrating ability in desert mammals
evolutionary biology more details view paper- Downloaded 402 times
- Download rankings, all-time:
- Site-wide: 110,122
- In evolutionary biology: 5,024
- Year to date:
- Site-wide: 167,497
- Since beginning of last month:
- Site-wide: 178,103
Joint Estimation of Pedigrees and Effective Population Size Using Markov Chain Monte Carlo
genetics more details view paper- Downloaded 396 times
- Download rankings, all-time:
- Site-wide: 111,526
- In genetics: 4,167
- Year to date:
- Site-wide: 177,124
- Since beginning of last month:
- Site-wide: 166,378
COAL_PHYRE: A Composite Likelihood Method for Estimating Species Tree Parameters from Genomic Data Using Coalescent Theory
evolutionary biology more details view paper- Downloaded 350 times
- Download rankings, all-time:
- Site-wide: 124,023
- In evolutionary biology: 5,632
- Year to date:
- Site-wide: 151,433
- Since beginning of last month:
- Site-wide: 152,136
Evolution of the genetic architecture of local adaptations under genetic rescue is determined by mutational load and polygenicity
genetics more details view paper- Downloaded 323 times
- Download rankings, all-time:
- Site-wide: 131,682
- In genetics: 5,028
- Year to date:
- Site-wide: 110,427
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- Site-wide: 82,500
SCONCE: A method for profiling Copy Number Alterations in Cancer Evolution using Single Cell Whole Genome Sequencing
bioinformatics more details view paper- Downloaded 204 times
- Download rankings, all-time:
- Site-wide: 166,043
- In bioinformatics: 12,329
- Year to date:
- Site-wide: 74,313
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- Site-wide: 148,914
SCONCE2: jointly inferring single cell copy number profiles and tumor evolutionary distances
bioinformatics more details view paper- Downloaded 142 times
- Download rankings, all-time:
- Site-wide: 179,776
- In bioinformatics: None
- Year to date:
- Site-wide: 31,830
- Since beginning of last month:
- Site-wide: 5,091
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