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Author: Rasmus Nielsen

Rankings

  • All-time downloads: 68,078 (rank: 1,842 )
  • Categories:
    • bioinformatics: 4,657 (rank: 2,334 )
    • epidemiology: 206 (rank: 20,209 (tie) )
    • evolutionary biology: 27,104 (rank: 40 )
    • genetics: 27,160 (rank: 213 )
    • genomics: 8,951 (rank: 1,951 (tie) )

Downloads per author, site-wide

Preprints

Population genomics of the Viking world

genetics more details view paper
  • Downloaded 16,715 times
  • Download rankings, all-time:
    • Site-wide: 353
    • In genetics: 9
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 1,672

The population history of northeastern Siberia since the Pleistocene

genomics more details view paper
  • Downloaded 6,950 times
  • Download rankings, all-time:
    • Site-wide: 1,095
    • In genomics: 112
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 11,356

The Genetic Cost of Neanderthal Introgression

evolutionary biology more details view paper
  • Downloaded 4,179 times
  • Download rankings, all-time:
    • Site-wide: 2,180
    • In evolutionary biology: 36
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 68,052

Synonymous mutations and the molecular evolution of SARS-Cov-2 origins

evolutionary biology more details view paper
  • Downloaded 3,573 times
  • Download rankings, all-time:
    • Site-wide: 2,730
    • In evolutionary biology: 50
  • Year to date:
    • Site-wide: 5,186
  • Since beginning of last month:
    • Site-wide: 4,487

Archaic adaptive introgression in TBX15/WARS2

evolutionary biology more details view paper
  • Downloaded 2,179 times
  • Download rankings, all-time:
    • Site-wide: 5,655
    • In evolutionary biology: 155
  • Year to date:
    • Site-wide: 27,183
  • Since beginning of last month:
    • Site-wide: 30,131

An approximate full-likelihood method for inferring selection and allele frequency trajectories from DNA sequence data

genetics more details view paper
  • Downloaded 2,107 times
  • Download rankings, all-time:
    • Site-wide: 5,940
    • In genetics: 300
  • Year to date:
    • Site-wide: 28,428
  • Since beginning of last month:
    • Site-wide: 51,166

Massive haplotypes underlie ecotypic differentiation in sunflowers

evolutionary biology more details view paper
  • Downloaded 1,933 times
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    • Site-wide: 6,733
    • In evolutionary biology: 206
  • Year to date:
    • Site-wide: 14,492
  • Since beginning of last month:
    • Site-wide: 22,170

Ohana: detecting selection in multiple populations by modelling ancestral admixture components

bioinformatics more details view paper
  • Downloaded 1,929 times
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    • Site-wide: 6,748
    • In bioinformatics: 850
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 70,863

A map of climate change-driven natural selection in Arabidopsis thaliana

evolutionary biology more details view paper
  • Downloaded 1,614 times
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    • Site-wide: 8,824
    • In evolutionary biology: 294
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 71,477

Disentangling selection on genetically correlated polygenic traits using whole-genome genealogies

genetics more details view paper
  • Downloaded 1,593 times
  • Download rankings, all-time:
    • Site-wide: 9,017
    • In genetics: 469
  • Year to date:
    • Site-wide: 1,384
  • Since beginning of last month:
    • Site-wide: 8,271

Assessing uncertainty in the rooting of the SARS-CoV-2 phylogeny

evolutionary biology more details view paper
  • Downloaded 1,545 times
  • Download rankings, all-time:
    • Site-wide: 9,440
    • In evolutionary biology: 325
  • Year to date:
    • Site-wide: 5,086
  • Since beginning of last month:
    • Site-wide: 2,508

Ohana, a tool set for population genetic analyses of admixture components

bioinformatics more details view paper
  • Downloaded 1,465 times
  • Download rankings, all-time:
    • Site-wide: 10,192
    • In bioinformatics: 1,295
  • Year to date:
    • Site-wide: 2,008
  • Since beginning of last month:
    • Site-wide: 73,749

VolcanoFinder: genomic scans for adaptive introgression

evolutionary biology more details view paper
  • Downloaded 1,427 times
  • Download rankings, all-time:
    • Site-wide: 10,597
    • In evolutionary biology: 380
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 88,836

Fitting the Balding-Nichols model to forensic databases

genetics more details view paper
  • Downloaded 1,312 times
  • Download rankings, all-time:
    • Site-wide: 12,047
    • In genetics: 626
  • Year to date:
    • Site-wide: 15,314
  • Since beginning of last month:
    • Site-wide: 9,375

No statistical evidence for an effect of CCR5-∆32 on lifespan in the UK Biobank cohort

genetics more details view paper
  • Downloaded 1,168 times
  • Download rankings, all-time:
    • Site-wide: 14,341
    • In genetics: 754
  • Year to date:
    • Site-wide: 36,537
  • Since beginning of last month:
    • Site-wide: 20,915

The origin and evolution of maize in the American Southwest

evolutionary biology more details view paper
  • Downloaded 1,106 times
  • Download rankings, all-time:
    • Site-wide: 15,595
    • In evolutionary biology: 643
  • Year to date:
    • Site-wide: 38,957
  • Since beginning of last month:
    • Site-wide: 48,079

Understanding Admixture Fractions

evolutionary biology more details view paper
  • Downloaded 1,099 times
  • Download rankings, all-time:
    • Site-wide: 15,734
    • In evolutionary biology: 652
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 115,862

The genetic architecture of sporadic and recurrent miscarriage

genetics more details view paper
  • Downloaded 1,088 times
  • Download rankings, all-time:
    • Site-wide: 15,965
    • In genetics: 833
  • Year to date:
    • Site-wide: 61,107
  • Since beginning of last month:
    • Site-wide: 39,552

Divergence, gene flow and the origin of leapfrog geographic distributions: The history of color pattern variation in Phyllobates poison-dart frogs

evolutionary biology more details view paper
  • Downloaded 1,023 times
  • Download rankings, all-time:
    • Site-wide: 17,467
    • In evolutionary biology: 759
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 17,816

Selection on the FADS region in Europeans

genetics more details view paper
  • Downloaded 936 times
  • Download rankings, all-time:
    • Site-wide: 19,992
    • In genetics: 1,010
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 95,272

Inferring the ancestry of parents and grandparents from genetic data

genetics more details view paper
  • Downloaded 898 times
  • Download rankings, all-time:
    • Site-wide: 21,179
    • In genetics: 1,073
  • Year to date:
    • Site-wide: 8,184
  • Since beginning of last month:
    • Site-wide: 11,935

Deviations from Hardy Weinberg Equilibrium at CCR5-Δ32 in Large Sequencing Data Sets?

evolutionary biology more details view paper
  • Downloaded 896 times
  • Download rankings, all-time:
    • Site-wide: 21,241
    • In evolutionary biology: 999
  • Year to date:
    • Site-wide: 34,947
  • Since beginning of last month:
    • Site-wide: 42,687

Estimating the timing of multiple admixture events using 3-locus Linkage Disequilibrium

bioinformatics more details view paper
  • Downloaded 865 times
  • Download rankings, all-time:
    • Site-wide: 22,397
    • In bioinformatics: 2,723
  • Year to date:
    • Site-wide: 57,236
  • Since beginning of last month:
    • Site-wide: 58,821

On The Number Of Siblings And p-th Cousins In A Large Population Sample

evolutionary biology more details view paper
  • Downloaded 838 times
  • Download rankings, all-time:
    • Site-wide: 23,417
    • In evolutionary biology: 1,130
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 63,365

Composite Likelihood Method for Inferring Local Pedigrees

genetics more details view paper
  • Downloaded 833 times
  • Download rankings, all-time:
    • Site-wide: 23,630
    • In genetics: 1,200
  • Year to date:
    • Site-wide: 63,668
  • Since beginning of last month:
    • Site-wide: 68,912

A hidden Markov model approach for simultaneously estimating local ancestry and admixture time using next generation sequence data in samples of arbitrary ploidy

evolutionary biology more details view paper
  • Downloaded 808 times
  • Download rankings, all-time:
    • Site-wide: 24,629
    • In evolutionary biology: 1,200
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 105,087

Estimating the timing of multiple admixture pulses during local ancestry inference.

evolutionary biology more details view paper
  • Downloaded 763 times
  • Download rankings, all-time:
    • Site-wide: 26,640
    • In evolutionary biology: 1,334
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 116,546

Non-additive polygenic models improve predictions of fitness traits in three eukaryote model species

evolutionary biology more details view paper
  • Downloaded 749 times
  • Download rankings, all-time:
    • Site-wide: 27,427
    • In evolutionary biology: 1,388
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 46,102

Detecting recent selective sweeps while controlling for mutation rate and background selection

evolutionary biology more details view paper
  • Downloaded 749 times
  • Download rankings, all-time:
    • Site-wide: 27,385
    • In evolutionary biology: 1,387
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 99,067

A population phylogenetic view of mitochondrial heteroplasmy

genomics more details view paper
  • Downloaded 746 times
  • Download rankings, all-time:
    • Site-wide: 27,565
    • In genomics: 2,600
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 105,953

A likelihood method for estimating present-day human contamination in ancient DNA samples using low-depth haploid chromosome data

genomics more details view paper
  • Downloaded 628 times
  • Download rankings, all-time:
    • Site-wide: 34,724
    • In genomics: 3,056
  • Year to date:
    • Site-wide: 30,484
  • Since beginning of last month:
    • Site-wide: 94,006

On the distribution of tract lengths during adaptive introgression

genomics more details view paper
  • Downloaded 627 times
  • Download rankings, all-time:
    • Site-wide: 34,832
    • In genomics: 3,062
  • Year to date:
    • Site-wide: 54,152
  • Since beginning of last month:
    • Site-wide: 43,954

The history and evolution of the Denisovan-EPAS1 haplotype in Tibetans

evolutionary biology more details view paper
  • Downloaded 598 times
  • Download rankings, all-time:
    • Site-wide: 36,956
    • In evolutionary biology: 1,982
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 23,160

Inferring Adaptive Introgression Using Hidden Markov Models

evolutionary biology more details view paper
  • Downloaded 558 times
  • Download rankings, all-time:
    • Site-wide: 40,277
    • In evolutionary biology: 2,227
  • Year to date:
    • Site-wide: 7,370
  • Since beginning of last month:
    • Site-wide: 10,561

The genomics of mimicry: gene expression throughout development provides insights into convergent and divergent phenotypes in a Müllerian mimicry system

evolutionary biology more details view paper
  • Downloaded 548 times
  • Download rankings, all-time:
    • Site-wide: 41,220
    • In evolutionary biology: 2,278
  • Year to date:
    • Site-wide: 9,783
  • Since beginning of last month:
    • Site-wide: 21,292

The distribution of waiting distances in ancestral recombination graphs and its applications

evolutionary biology more details view paper
  • Downloaded 540 times
  • Download rankings, all-time:
    • Site-wide: 42,053
    • In evolutionary biology: 2,322
  • Year to date:
    • Site-wide: 579
  • Since beginning of last month:
    • Site-wide: 540

Joint Estimation of Pedigrees and Effective Population Size Using Markov Chain Monte Carlo

genetics more details view paper
  • Downloaded 361 times
  • Download rankings, all-time:
    • Site-wide: 64,493
    • In genetics: 3,087
  • Year to date:
    • Site-wide: 46,688
  • Since beginning of last month:
    • Site-wide: 110,083

A Bayesian framework for inferring the influence of sequence context on single base modifications

bioinformatics more details view paper
  • Downloaded 331 times
  • Download rankings, all-time:
    • Site-wide: 69,621
    • In bioinformatics: 6,644
  • Year to date:
    • Site-wide: 63,804
  • Since beginning of last month:
    • Site-wide: 112,323

COAL_PHYRE: A Composite Likelihood Method for Estimating Species Tree Parameters from Genomic Data Using Coalescent Theory

evolutionary biology more details view paper
  • Downloaded 223 times
  • Download rankings, all-time:
    • Site-wide: 90,993
    • In evolutionary biology: 5,014
  • Year to date:
    • Site-wide: 36,898
  • Since beginning of last month:
    • Site-wide: 13,446

Inferring person-to-person networks of pathogen transmission: is routine surveillance data up to the task?

epidemiology more details view paper
  • Downloaded 206 times
  • Download rankings, all-time:
    • Site-wide: 94,497
    • In epidemiology: 3,790
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 107,148

Convergent evolution of increased urine concentrating ability in desert mammals

evolutionary biology more details view paper
  • Downloaded 156 times
  • Download rankings, all-time:
    • Site-wide: 104,543
    • In evolutionary biology: 5,619
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 54,021

Evolution of the genetic architecture of local adaptations under genetic rescue is determined by mutational load and polygenicity

genetics more details view paper
  • Downloaded 149 times
  • Download rankings, all-time:
    • Site-wide: 105,874
    • In genetics: 4,766
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    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 21,576

AncestralClust: Clustering of Divergent Nucleotide Sequences by Ancestral Sequence Reconstruction using Phylogenetic Trees

bioinformatics more details view paper
  • Downloaded 67 times
  • Download rankings, all-time:
    • Site-wide: 119,483
    • In bioinformatics: 9,633
  • Year to date:
    • Site-wide: 1,599
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