Author: Rasmus Nielsen

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Preprints

Estimating population split times and migration rates from historical effective population sizes

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Population genomics of the Viking world

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The population history of northeastern Siberia since the Pleistocene

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Population Genomics of Stone Age Eurasia

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The Genetic Cost of Neanderthal Introgression

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Synonymous mutations and the molecular evolution of SARS-Cov-2 origins

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The genetic architecture of phenotypic diversity in the betta fish (Betta splendens)

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Ohana: detecting selection in multiple populations by modelling ancestral admixture components

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Archaic adaptive introgression in TBX15/WARS2

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An approximate full-likelihood method for inferring selection and allele frequency trajectories from DNA sequence data

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Massive haplotypes underlie ecotypic differentiation in sunflowers

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Assessing uncertainty in the rooting of the SARS-CoV-2 phylogeny

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Disentangling selection on genetically correlated polygenic traits using whole-genome genealogies

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A map of climate change-driven natural selection in Arabidopsis thaliana

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Ohana, a tool set for population genetic analyses of admixture components

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Fitting the Balding-Nichols model to forensic databases

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VolcanoFinder: genomic scans for adaptive introgression

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Evaluation of methods for estimating coalescence times using ancestral recombination graphs

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Divergence, gene flow and the origin of leapfrog geographic distributions: The history of color pattern variation in Phyllobates poison-dart frogs

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No statistical evidence for an effect of CCR5-∆32 on lifespan in the UK Biobank cohort

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Inferring the ancestry of parents and grandparents from genetic data

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The history and evolution of the Denisovan-EPAS1 haplotype in Tibetans

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Understanding Admixture Fractions

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The genetic architecture of sporadic and recurrent miscarriage

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The origin and evolution of maize in the American Southwest

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The distribution of waiting distances in ancestral recombination graphs and its applications

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Estimating the timing of multiple admixture events using 3-locus Linkage Disequilibrium

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Non-additive polygenic models improve predictions of fitness traits in three eukaryote model species

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Deviations from Hardy Weinberg Equilibrium at CCR5-Δ32 in Large Sequencing Data Sets?

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On The Number Of Siblings And p-th Cousins In A Large Population Sample

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Selection on the FADS region in Europeans

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Composite Likelihood Method for Inferring Local Pedigrees

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A hidden Markov model approach for simultaneously estimating local ancestry and admixture time using next generation sequence data in samples of arbitrary ploidy

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Detecting recent selective sweeps while controlling for mutation rate and background selection

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Estimating the timing of multiple admixture pulses during local ancestry inference.

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The genomics of mimicry: gene expression throughout development provides insights into convergent and divergent phenotypes in a Müllerian mimicry system

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A likelihood method for estimating present-day human contamination in ancient DNA samples using low-depth haploid chromosome data

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A population phylogenetic view of mitochondrial heteroplasmy

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Inferring Adaptive Introgression Using Hidden Markov Models

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AncestralClust: Clustering of Divergent Nucleotide Sequences by Ancestral Sequence Reconstruction using Phylogenetic Trees

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On the distribution of tract lengths during adaptive introgression

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Inferring person-to-person networks of Plasmodium falciparum transmission: is routine surveillance data up to the task?

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Estimating the relative proportions of SARS-CoV-2 strains from wastewater samples

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A Bayesian framework for inferring the influence of sequence context on single base modifications

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Convergent evolution of increased urine concentrating ability in desert mammals

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Joint Estimation of Pedigrees and Effective Population Size Using Markov Chain Monte Carlo

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COAL_PHYRE: A Composite Likelihood Method for Estimating Species Tree Parameters from Genomic Data Using Coalescent Theory

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Evolution of the genetic architecture of local adaptations under genetic rescue is determined by mutational load and polygenicity

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SCONCE: A method for profiling Copy Number Alterations in Cancer Evolution using Single Cell Whole Genome Sequencing

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SCONCE2: jointly inferring single cell copy number profiles and tumor evolutionary distances

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