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Author: Eric J. Alm

Rankings

  • All-time downloads: 22,405 (rank: 2,299 out of 380,464)
  • Categories:
    • bioinformatics: 6,767 (rank: 1,057 out of 32,581)
    • ecology: 634 (rank: 4,541 (tie) out of 16,352)
    • evolutionary biology: 6,540 (rank: 270 out of 19,505)
    • genomics: 829 (rank: 19,832 (tie) out of 40,588)
    • immunology: 974 (rank: 4,226 (tie) out of 20,621)
    • microbiology: 6,661 (rank: 955 out of 42,558)

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Preprints

Adaptive evolution within the gut microbiome of individual people

evolutionary biology more details view paper
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A practical guide to methods controlling false discoveries in computational biology

bioinformatics more details view paper
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Correcting for batch effects in case-control microbiome studies

bioinformatics more details view paper
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Random Sequences Rapidly Evolve Into De Novo Promoters

evolutionary biology more details view paper
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Endospores and other lysis-resistant bacteria comprise a widely shared core community within the human microbiota

microbiology more details view paper
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Transmission of human-associated microbiota along family and social networks

microbiology more details view paper
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Longitudinal immunosequencing in healthy people reveals persistent T cell receptors rich in public receptors

immunology more details view paper
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Predictability and persistence of prebiotic dietary supplementation in a healthy human cohort

microbiology more details view paper
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24-hour multi-omics analysis of residential sewage reflects human activity and informs public health

genomics more details view paper
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Industrialization is associated with elevated rates of horizontal gene transfer in the human microbiome

microbiology more details view paper
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Choosing Your Battles: Which Resistance Genes Warrant Global Action?

microbiology more details view paper
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    • In microbiology: 1,239 out of 7,640
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Designing fecal microbiota transplant trials that account for differences in donor stool efficacy

bioinformatics more details view paper
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    • In bioinformatics: 3,040 out of 8,390
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Interactions in self-assembled microbial communities saturate with diversity

ecology more details view paper
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    • In ecology: 617 out of 3,890
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    • Site-wide: 51,097 out of 88,741

Dynamic colonization of microbes and their functions after fecal microbiota transplantation for inflammatory bowel disease

microbiology more details view paper
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    • Site-wide: 25,329 out of 88,741
    • In microbiology: 1,587 out of 7,640
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    • Site-wide: 13,532 out of 88,741

Multi-site sampling and risk prioritization reveals the public health relevance of antibiotic resistance genes found in wastewater environments

microbiology more details view paper
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    • In microbiology: 1,764 out of 7,640
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    • Site-wide: 17,602 out of 88,741

Aerodigestive sampling reveals altered microbial exchange between lung, oropharyngeal, and gastric microbiomes in children with impaired swallow function

microbiology more details view paper
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Prebiotics and community composition influence gas production of the human gut microbiota

microbiology more details view paper
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Longitudinal wastewater sampling in buildings reveals temporal dynamics of metabolites

bioinformatics more details view paper
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    • In bioinformatics: 7,243 out of 8,390
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